New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3451941 =61 (1.130)3 (0.060) 3/252 NT 5.4% coding (1506/2478 nt) PP_3069 outer membrane autotransporter
?NC_002947 3451985 = 45 (0.860)coding (1462/2478 nt) PP_3069 outer membrane autotransporter

TGGTGGAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGAACAGCCGATAGTCG  >  NC_002947/3451840‑3452133
                                                                                                                                                 |                                                                                                                                                     
tggtggAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAc                                                                                                                                                    <  1:58951/149‑1 (MQ=255)
ctggtacctgcgctcgacgctggttgcgccacccgctccagcccctgtgccggcaccgggcgagccgccggtgatcgccccagccgtcaccccgcccgtcgCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAc                                                                                                                                                    >  7:42928‑M1/102‑149 (MQ=255)
     gAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcg                                                                                                                                               >  6:320962/1‑149 (MQ=255)
     gAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcg                                                                                                                                               >  3:199029/1‑149 (MQ=255)
     gAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcg                                                                                                                                               >  5:79047/1‑149 (MQ=255)
      aaGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcgg                                                                                                                                              <  4:199029/149‑1 (MQ=255)
           gCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgg                                                                                                                                                  >  6:210240/1‑140 (MQ=255)
           gCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgg                                                                                                                                                  <  5:210240/140‑1 (MQ=255)
            cccAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGAc                                                                                                                                        >  4:192591/1‑149 (MQ=255)
                   ccTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGGCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTgg                                                                                                                                  <  3:132080/148‑1 (MQ=255)
                     tGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGc                                                                                                                               >  6:198728/1‑149 (MQ=255)
                     tGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGTGACGGCAGGGGCg                                                                                                                              >  6:1036/1‑149 (MQ=255)
                        cgggcgATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGAt                                                                                                                            <  6:79047/149‑1 (MQ=255)
                             gatgatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcg                                                                                                                       >  4:183322/1‑149 (MQ=255)
                               tgatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggc                                                                                                                     <  3:183322/149‑1 (MQ=255)
                                gatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTgggg                                                                                                                                >  8:261686/1‑137 (MQ=255)
                                gatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTgggg                                                                                                                                <  7:261686/137‑1 (MQ=255)
                                  tCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCggcggc                                                                                                                  >  5:65776/1‑149 (MQ=255)
                                  tCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCggcggc                                                                                                                  <  2:26150/149‑1 (MQ=255)
                                         cccccGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCg                                                                                                           <  3:339233/149‑1 (MQ=255)
                                             cgcgGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGc                                                                                                       >  4:243061/1‑149 (MQ=255)
                                                ggcgCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCgg                                                                                                    <  6:65776/149‑1 (MQ=255)
                                                         gCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggc                                                                                                                     <  1:141159/123‑1 (MQ=255)
                                                         gCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggc                                                                                                                     >  2:141159/1‑123 (MQ=255)
                                                         gCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGc                                                                                          <  3:243061/149‑1 (MQ=255)
                                                              cacCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAg                                                                                     <  7:15612/149‑1 (MQ=255)
                                                                 cGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCgg                                                                                  <  5:320962/149‑1 (MQ=255)
                                                                  gggACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCggg                                                                                 <  5:198728/149‑1 (MQ=255)
                                                                   ggACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGt                                                                                <  6:19226/149‑1 (MQ=255)
                                                                      ccTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGt                                                                                >  2:281154/1‑146 (MQ=255)
                                                                      ccTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGgc                                                                             <  3:192591/149‑1 (MQ=255)
                                                                      ccTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCACGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGt                                                                                <  1:281154/146‑1 (MQ=255)
                                                                       cTCGGTGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggcgg                                                                                                                   >  6:350450/1‑111 (MQ=255)
                                                                       cTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGTCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggcgg                                                                                                                   <  5:350450/111‑1 (MQ=255)
                                                                         cGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGt                                                                                >  6:297283/1‑143 (MQ=255)
                                                                         cGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCCGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGt                                                                                <  5:297283/143‑1 (MQ=255)
                                                                                  aCAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTc                                                                 >  7:83284/1‑149 (MQ=255)
                                                                                     gCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAg                                                              >  8:18250/1‑149 (MQ=255)
                                                                                      cGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGGCGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAgc                                                             >  5:311862/1‑149 (MQ=255)
                                                                                        gCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAgcg                                                            >  1:303261/1‑148 (MQ=255)
                                                                                         cAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCTGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa                                                          <  8:20368/149‑1 (MQ=255)
                                                                                         cAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa                                                          <  3:58168/149‑1 (MQ=255)
                                                                                                 gtcgctgcgccagcgcccggccaggccgagctgccggcgccggtgcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAg                                                  >  7:42928‑M2/49‑149 (MQ=255)
                                                                                                  gCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa                                                          <  1:42105/141‑1 (MQ=255)
                                                                                                  gCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa                                                          >  2:42105/1‑140 (MQ=255)
                                                                                                    ccTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTg                                               >  1:73861/1‑149 (MQ=255)
                                                                                                     CTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGt                                              <  1:61866‑M1/149‑1 (MQ=255)
                                                                                                     CTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGACGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGt                                              <  1:259785‑M1/149‑1 (MQ=255)
                                                                                                      tgcgccagcgcccggccaggccgagctgccggcgccggtgcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCAGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCgg                                                                                  <  6:122596‑M2/69‑1 (MQ=255)
                                                                                                      tgcgccagcgcccggccaggccgagctgccggcgccggtgcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCAGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCgg                                                                                  >  5:122596‑M2/44‑112 (MQ=255)
                                                                                                       GCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCCGCTGttt                                            <  5:102825‑M1/149‑1 (MQ=255)
                                                                                                        CACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGGCGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGtttt                                           >  6:311862‑M1/1‑149 (MQ=255)
                                                                                                          ccGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCa                                         >  2:80032/1‑149 (MQ=255)
                                                                                                                 cGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCgg                                  <  2:303261/149‑1 (MQ=255)
                                                                                                                                           gcgcAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGAACAGCCGa        <  8:83284/149‑1 (MQ=255)
                                                                                                                                                 cGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGACCAGCCGATAGTCg  >  6:320944/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                     
TGGTGGAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGAACAGCCGATAGTCG  >  NC_002947/3451840‑3452133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.