New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3451941 = | 61 (1.130) | 3 (0.060) | 3/252 | NT | 5.4% | coding (1506/2478 nt) | PP_3069 | outer membrane autotransporter |
? | NC_002947 | 3451985 = | 45 (0.860) | coding (1462/2478 nt) | PP_3069 | outer membrane autotransporter |
TGGTGGAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGAACAGCCGATAGTCG > NC_002947/3451840‑3452133 | tggtggAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAc < 1:58951/149‑1 (MQ=255) ctggtacctgcgctcgacgctggttgcgccacccgctccagcccctgtgccggcaccgggcgagccgccggtgatcgccccagccgtcaccccgcccgtcgCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAc > 7:42928‑M1/102‑149 (MQ=255) gAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcg > 6:320962/1‑149 (MQ=255) gAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcg > 3:199029/1‑149 (MQ=255) gAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcg > 5:79047/1‑149 (MQ=255) aaGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgggcgg < 4:199029/149‑1 (MQ=255) gCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgg > 6:210240/1‑140 (MQ=255) gCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGAcgg < 5:210240/140‑1 (MQ=255) cccAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGAc > 4:192591/1‑149 (MQ=255) ccTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGGCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTgg < 3:132080/148‑1 (MQ=255) tGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGc > 6:198728/1‑149 (MQ=255) tGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGC‑GGGTGACGGCAGGGGCg > 6:1036/1‑149 (MQ=255) cgggcgATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGAt < 6:79047/149‑1 (MQ=255) gatgatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcg > 4:183322/1‑149 (MQ=255) tgatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggc < 3:183322/149‑1 (MQ=255) gatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTgggg > 8:261686/1‑137 (MQ=255) gatCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTgggg < 7:261686/137‑1 (MQ=255) tCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCggcggc > 5:65776/1‑149 (MQ=255) tCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCggcggc < 2:26150/149‑1 (MQ=255) cccccGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCg < 3:339233/149‑1 (MQ=255) cgcgGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGc > 4:243061/1‑149 (MQ=255) ggcgCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCgg < 6:65776/149‑1 (MQ=255) gCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggc < 1:141159/123‑1 (MQ=255) gCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggc > 2:141159/1‑123 (MQ=255) gCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑c < 3:243061/149‑1 (MQ=255) cacCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAg < 7:15612/149‑1 (MQ=255) cGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCgg < 5:320962/149‑1 (MQ=255) gggACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCggg < 5:198728/149‑1 (MQ=255) ggACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGt < 6:19226/149‑1 (MQ=255) ccTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGt > 2:281154/1‑146 (MQ=255) ccTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGgc < 3:192591/149‑1 (MQ=255) ccTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCACGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGt < 1:281154/146‑1 (MQ=255) cTCGGTGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggcgg > 6:350450/1‑111 (MQ=255) cTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGTCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACcggcgg < 5:350450/111‑1 (MQ=255) cGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGt > 6:297283/1‑143 (MQ=255) cGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCCGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGt < 5:297283/143‑1 (MQ=255) aCAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTc > 7:83284/1‑149 (MQ=255) gCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAg > 8:18250/1‑149 (MQ=255) cGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGGCGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAgc > 5:311862/1‑149 (MQ=255) gCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAgcg > 1:303261/1‑148 (MQ=255) cAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCTGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa < 8:20368/149‑1 (MQ=255) cAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa < 3:58168/149‑1 (MQ=255) gtcgctgcgccagcgcccggccaggccgagctgccggcgccggtgcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAg > 7:42928‑M2/49‑149 (MQ=255) gCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa < 1:42105/141‑1 (MQ=255) gCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCa > 2:42105/1‑140 (MQ=255) ccTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTg > 1:73861/1‑149 (MQ=255) CTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGt < 1:61866‑M1/149‑1 (MQ=255) CTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGACGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGt < 1:259785‑M1/149‑1 (MQ=255) tgcgccagcgcccggccaggccgagctgccggcgccggtgcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCAGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCgg < 6:122596‑M2/69‑1 (MQ=255) tgcgccagcgcccggccaggccgagctgccggcgccggtgcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCAGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCgg > 5:122596‑M2/44‑112 (MQ=255) GCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCCGCTGttt < 5:102825‑M1/149‑1 (MQ=255) CACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGGCGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGtttt > 6:311862‑M1/1‑149 (MQ=255) ccGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCa > 2:80032/1‑149 (MQ=255) cGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCgg < 2:303261/149‑1 (MQ=255) gcgcAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGAACAGCCGa < 8:83284/149‑1 (MQ=255) cGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGACCAGCCGATAGTCg > 6:320944/1‑149 (MQ=255) | TGGTGGAAGGTGCCCAGTGCCTGGCGGGCGATGATCGCGGCCCCCCGCGGCGCTGCGGCATACACCGGGACCTCGGGGCGGTACAGCGGCAGGCTTTGGCCCTGCACCGGCGCCGGCAGCTCGGCCTGGCCGGGCGCTGGCGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGG‑CTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAGCTGTTTTCACTGCCGGCAGTAACGCCCCCTTTGAACAGCCGATAGTCG > NC_002947/3451840‑3452133 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |