New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 347486164 (1.180)3 (0.060) 3/248 NT 5.1% coding (1852/2517 nt) PP_3087 excinuclease ABC subunit A
?NC_002947 = 3474897 51 (0.990)coding (1816/2517 nt) PP_3087 excinuclease ABC subunit A

ACGCTGGGCATGAACAGCAGCTCGACGCTGACGAAACCCTCTCCCTCGCAGTTGGCGCACCGGCCCTTGGCAACGTTGAAGGAAAAGCGCCCGGCGTCGAAGCCCTGTGCCTTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3474743‑3474861
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAGGCCAAGGCACAGGGCTTCGACGCCGGGCGCTTTTCCTTCAACGTTGCCAAGGGCCGGTGCGCCAACTGCGAGGGAGAGGGTTTCGTCAGCGTCGAGCTGCTGTTCATGC  <  NC_002947/3474897‑3474750
                                                                                                                                                                                                                                                                           
ACGCTGGGCATGAACAGCAGCTCGACGCTGACGAAACCCTCTCCCTCGCAGTTGGCGCACCGGCCCTTGGCAACGTTGAAGGAAAAGCGCCCGGCGTCGAAGCCCTGTGCCTTGGC                                                                                                                                                         >  5:189926/1‑116
ACGCTGGGCATGAACAGCAGCTCGACGCTGACGAAACCCTCTCCCTCGCAGTTGGCGCACCGGCCCTTGGCAACGTTGAAGGAAAAGCGCCCGGCGTCGAAGCCCTGTGCCTTGGC                                                                                                                                                         <  6:189926/116‑1
         ATGAACAGCAGCTCGACGCTGACGAAACCCTCTCCCTCGCAGTTGGCGCACCGGCCCTTGGCAACGTTGAAGGAAAAGCGCCCGGCGTCGAAGCCCTGTGCCTTGGCCTGTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAG                                                                                                               <  5:54981/149‑1
              CAGCAGCTCGACGCTGACGAAACCCTCTCCCTCGCAGTTGGCGCACCGGCCCTTGGCAACGTTGAAGGAAAAGCGCCCGGCGTCGAAGCCCTGTGCCTTGGCCTGTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAGGCCAA                                                                                                          <  8:3102/149‑1
                GCAGCTCGACGCTGACGAAACCCTCTCCCTCGCAGTTGGCGCACCGGCCCTTGGCAACGTTGAAGGAAAAGCGCCCGGCGTCGAAGCCCTGTGCCTTGGCCTGTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAGGCCAAGG                                                                                                        <  3:263205/149‑1
                                                                                                                  GCCTGTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAGGCCAAGGCACAGGTCTTCGACGCCGGGCGCTTTTCCTTCAACGTTGCCAAGGGCCGGTGCGCCAACTGCGAGGGAGAGGGTTTCGTCAGCGTCGAGCTGCTGTTC      <  8:309235/149‑1
                                                                                                                     TGTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAGGCCAAGGCACAGGGCTTCGACGCCGGGCGCTTTTCCTTCAACGTTGCCAAGGGCCGGTGCGCCAACTGCGAGGGAGAGGGTTTCGTCAGCGTCGAGCTGCTGTTCATG   >  8:44232/1‑149
                                                                                                                      GTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAGGCCAAGGCACAGGGCTTCGACGCCGGGCGCTTTTCCTTCAACGTTGCCAAGGGCCGGTGCGCCAACTGCGAGGGAGAGGGTTTCGTCAGCGTCGAGCTGCTGTTCATGC  <  8:164159/149‑1
                                                                                                                                                                                                                                                                           
ACGCTGGGCATGAACAGCAGCTCGACGCTGACGAAACCCTCTCCCTCGCAGTTGGCGCACCGGCCCTTGGCAACGTTGAAGGAAAAGCGCCCGGCGTCGAAGCCCTGTGCCTTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3474743‑3474861
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTTCGACCACGTGCGCAAATGCTTCGCGGCTACCGAGCAGGCCAAGGCACAGGGCTTCGACGCCGGGCGCTTTTCCTTCAACGTTGCCAAGGGCCGGTGCGCCAACTGCGAGGGAGAGGGTTTCGTCAGCGTCGAGCTGCTGTTCATGC  <  NC_002947/3474897‑3474750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.