New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3601622 =	36 (0.670)	6 (0.120)	4/244	NT	12.4%	coding (339/1170 nt)	PP_3177	hypothetical protein
	?	NC_002947	3601705 =	51 (1.010)					coding (422/1170 nt)	PP_3177	hypothetical protein

CCGCCGAGCAGTAGCGCCAGCAGGTCGTCACAGCGCTGCCTTCGCCATTGCTGGTCAGCCTGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3601774‑3601622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaacGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCCGCGCTTGCTGGACGAAGCCCGTCAGTTGGGCCTGAAACCTCAGCTACCGCGGATACCGTGC  >  NC_002947/3601705‑3601850                                                                                                                                                                                                                                                                                                             CCGCCGAGCAGTAGCGCCAGCAGGTCGTCACAGCGCTGCCTTCGCCATTGCTGGTCAGCCTGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGG                                                                                                                                                          <  4:124429/147‑1  CGCCGAGCAGTAGCGCCAGCAGGTCGTCACAGCGCTGCCTTCGCCATTGCTGGTGAGCCTGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCC                                                                                                                                                       <  6:192995/149‑1   GCCGAGCAGTAGCGCCAGCAGGTCGTCACAGCGCTGCCTTCGCCATTGCTGGTCAGCCTGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCC                                                                                                                                                       >  6:78848/1‑148                  CAGCAGGTCGTCACAGCGCTGCCTTCGCCATTGCTGGTCAGCCTGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGG                                                                                                                                                          >  3:247198/1‑130                  CAGCAGGTCGTCACAGCGCTGCCTTCGCCATTGCTGGTCAGCCTGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGG                                                                                                                                                          <  4:247198/130‑1                                                             TGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCACCGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTCTGCCGACCTGCTGGCG                                                                                            >  2:56434/1‑149                                                             TGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCG                                                                                            >  2:51383/1‑149                                                                       GTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCG                                                                                  >  7:295158/1‑149                                                                                     ATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAA                                                                     <  8:295158/148‑1                                                                                          GGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTTCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCC                                                               <  1:56434/149‑1                                                                                          GGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCC                                                               <  1:51383/149‑1                                                                                                                                                     CCAACCAAATTTACAGGCTGACCAGCAATCGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGCCGGCAGCGCTAACTCCCCGCGCTTGCAGGACGAAGCCCGACAGTTGGTCCTGAAACCTCAGCTACCGCGGATACAGT    >  7:313213/1‑149                                                                                                                                                      CAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCCGCGCTTGCTGGACGAAGCCCGTCAGTTGGGCCTGAAACCTCAGCTACCGCGGATACCGTG   >  4:332139/1‑149                                                                                                                                                      CAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCCGCGCTTGCTGGACGAAGCCCGTCAGTTGGGCCTGAAACCTCAGCTACCGCGGATACCGTG   >  4:337502/1‑149                                                                                                                                                       AACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCCGCGCTTGCTGGACGAAGCCCGTCAGTTGGGCCTGAAACCTCAGCTACCGCGGATACCGTGC  <  3:234901/149‑1                                                                                                                                                       AACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCCGCGCTTGCTGGACGAAGCCCGTCAGTTGGGCCTGAAACCTCAGCTACCGCGGATACCGTGC  <  5:217729/149‑1                                                                                                                                                                                                                                                                                                             CCGCCGAGCAGTAGCGCCAGCAGGTCGTCACAGCGCTGCCTTCGCCATTGCTGGTCAGCCTGTAAATTGCGTTGGGCCAGCAGCATTTCGGCGGTCATGCGCACCAGCTCGCCATAGGTGCGCACCTGCTGCGGGTCGCCAGTCAGGCCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3601774‑3601622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaacGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTCGGCGGCAGCGGTAACTCGCCGCGCTTGCTGGACGAAGCCCGTCAGTTGGGCCTGAAACCTCAGCTACCGCGGATACCGTGC  >  NC_002947/3601705‑3601850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.