New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3601622 =	36 (0.670)	6 (0.120)	4/244	NT	12.4%	coding (339/1170 nt)	PP_3177	hypothetical protein
	?	NC_002947	3601705 =	51 (1.010)					coding (422/1170 nt)	PP_3177	hypothetical protein

CGTATCAACACCCGTCACGAGGGCGCGCAGCTGGTCTTGGCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTC  >  NC_002947/3601476‑3601769                                                                                                                                                   |                                                                                                                                                    gcacggtatccgcggtagctgaggtttcaggcccaactgacgggcttcgtccagcaagcgcggcgagttaccgctgccgccgagcagtagcgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGtt                                                                                                                                                   <  5:217729‑M1/3‑1 (MQ=255) gcacggtatccgcggtagctgaggtttcaggcccaactgacgggcttcgtccagcaagcgcggcgagttaccgctgccgccgagcagtagcgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGtt                                                                                                                                                   <  3:234901‑M1/3‑1 (MQ=255) cGTATCAACACCCGTCACGAGGGCGCGCAGCTGGTCTTGGCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGtt                                                                                                                                                   <  3:277817/149‑1 (MQ=255)  cacggtatccgcggtagctgaggtttcaggcccaactgacgggcttcgtccagcaagcgcggcgagttaccgctgccgccgagcagtagcgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGTTg                                                                                                                                                  >  4:332139‑M1/146‑149 (MQ=255)  cacggtatccgcggtagctgaggtttcaggcccaactgacgggcttcgtccagcaagcgcggcgagttaccgctgccgccgagcagtagcgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGTTg                                                                                                                                                  >  4:337502‑M1/146‑149 (MQ=255)   actgtatccgcggtagctgaggtttcaggaccaactgtcgggcttcgtcctgcaagcgcggggagttagcgctgccggcgagcagtagcgccagcaggtcgtcacagcgctgccttcgcgattgctggtcagcctgtaaatttggttgg                                                                                                                                                 >  7:313213‑M1/145‑149 (MQ=255)              gTCACGAGGGCGCGCAGCTGGTCTTGGCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGc                                                                                                                                      <  2:62739/149‑1 (MQ=255)                            cAGCTGGTCTTGGCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGt                                                                                                                        <  5:146234/149‑1 (MQ=255)                              gCTGGTCTTGGCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTgc                                                                                                                      <  5:50380/149‑1 (MQ=255)                                      tGGCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTAt                                                                                                              >  8:129701/1‑149 (MQ=255)                                        gCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATg                                                                                                             <  7:129701/148‑1 (MQ=255)                                           aaTGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGc                                                                                                           >  7:115477/1‑147 (MQ=255)                                               gCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTg                                                                                                     >  6:172001/1‑149 (MQ=255)                                                 cGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGCGCGTGCAGCCCGGCGTGAACCTGCCATTCATGCTCGATGCGCCGCTCATCGGCGTGTTCGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGaccag                                                                                                     >  2:12069/1‑143 (MQ=255)                                                 cGGATCGTAGACCTGGCTACCGCCCCGGCCAAGTGCCTGAAGGGCGTGCGGCCCGGCGTGAACGACCCATTTATGCTCGTTGCGCCGCTGATGGTCGTGTTGGGACTGACTGTCGACCCGCAGCAGGTGCGGTCCTATGGCGAggtggt                                                                                                   <  4:251295/149‑1 (MQ=255)                                                        tcgAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCAt                                                                                             >  4:49062/1‑148 (MQ=255)                                                              ggcgagttaccgctgccgccgagcagtagcgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGAccgcc                                                                                      <  1:51383‑M1/64‑1 (MQ=255)                                                              ggcgagttaccgctgccgccgagcagtagcgccagaaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGAccgcc                                                                                      <  1:56434‑M1/64‑1 (MQ=255)                                                                   aCCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAAt                                                                                 >  1:96861/1‑149 (MQ=255)                                                                    ttaccgctgccgccgagcagtagcgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAAt                                                                                 <  8:295158‑M1/69‑1 (MQ=255)                                                                      gACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAAtgct                                                                              >  3:190762/1‑149 (MQ=255)                                                                         gcgGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATgctgct                                                                           >  8:20762/1‑149 (MQ=255)                                                                            gCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGc                                                                        <  3:49062/149‑1 (MQ=255)                                                                             ccAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGcc                                                                       >  1:104312/1‑149 (MQ=255)                                                                                 gTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGACGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAAc                                                                   <  4:80702/149‑1 (MQ=255)                                                                                 cgagcagtagcgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAAc                                                                   >  7:295158‑M1/67‑149 (MQ=255)                                                                                      tGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAAt                                                              >  8:23019/1‑149 (MQ=255)                                                                                           cgccagcaggtcgtcacagcgctgccttcgccattgctggtcagcctgtaaattgcGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACa                                                         >  2:51383‑M1/57‑149 (MQ=255)                                                                                           cgccagcaggtcggcagagcgctgccttcgccattgctggtcagcctgtaaattgcGGTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACa                                                         >  2:56434‑M1/57‑149 (MQ=255)                                                                                             cGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAgg                                                       <  5:172001/149‑1 (MQ=255)                                                                                              gTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGc                                                      >  2:13098/1‑149 (MQ=255)                                                                                                    cccGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGAc                                                  >  3:318090/1‑147 (MQ=255)                                                                                                    cccGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCa                                                <  8:115477/149‑1 (MQ=255)                                                                                                    cccGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAAATTACAGGCTGAc                                                  >  7:123803/1‑147 (MQ=255)                                                                                                        gCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCaa                                            >  8:262837/1‑149 (MQ=255)                                                                                                               ccTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGaa                                     <  4:190762/149‑1 (MQ=255)                                                                                                                cTGCCATTGATGCTCGATTGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAg                                    >  1:204095/1‑149 (MQ=255)                                                                                                                cTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAg                                    >  5:136451/1‑149 (MQ=255)                                                                                                                     aTTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAgc                               >  5:78848/1‑149 (MQ=255)                                                                                                                     aTTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAgc                               <  2:104312/149‑1 (MQ=255)                                                                                                                      ttGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAgcg                              <  7:20762/149‑1 (MQ=255)                                                                                                                          tGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCtgt                          <  7:262837/149‑1 (MQ=255)                                                                                                                            cTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCtgtgc                        >  6:326422/1‑148 (MQ=255)                                                                                                                                      ggcTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAAttt                                                            >  6:76222/1‑103 (MQ=255)                                                                                                                                      ggcTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAAttt                                                            <  5:76222/103‑1 (MQ=255)                                                                                                                                       gcTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTgg             >  4:152248/1‑149 (MQ=255)                                                                                                                                       gcTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTgg             >  4:147080/1‑149 (MQ=255)                                                                                                                                           aTGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCt         <  5:326422/149‑1 (MQ=255)                                                                                                                                               gCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTg     >  8:61200/1‑149 (MQ=255)                                                                                                                                                  tgtTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTc  <  2:96861/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGTATCAACACCCGTCACGAGGGCGCGCAGCTGGTCTTGGCCAATGGCCGGATCGTCGAACTGGATACCGACGCGGCCAAGTGCCTGAAGGGCGTGCAGCCCGGCGTGAACCTGCCATTGATGCTCGATGGGCGGCTGATGGGCGTGTTGGGCCTGACTGGCGACCCGCAGCAGGTGCGCACCTATGGCGAGCTGGTGCGCATGACCGCCGAAATGCTGCTGGCCCAACGCAATTTACAGGCTGACCAGCAATGGCGAAGGCAGCGCTGTGACGACCTGCTGGCGCTACTGCTC  >  NC_002947/3601476‑3601769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.