| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3860850 = | 59 (1.090) | 5 (0.100) | 4/246 | NT | 8.1% | coding (401/615 nt) | PP_3412 | LuxR family transcriptional regulator |
| ? | NC_002947 | 3860886 = | 58 (1.130) | coding (437/615 nt) | PP_3412 | LuxR family transcriptional regulator | |||||
CTTTTCCATGATACGGCCCCGGTAGGTGCTGATGGTCTTGGCGCTGAGGTTCATGCAAGTGCCGATGTTCTTGTTGTTCTCGCCGCGCGCGAGGCGCCGCAGCACTTCCATTTCTCGGTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3861004‑3860850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGT > NC_002947/3860886‑3861033 CTTTTCCATGATACGGCCCCGGTAGGTGCTGATGGTCTTGGCGCTGAGGTTCATGCAAGTGCCGATGTTCTTGTTGTTCTCGCCGCGCGCGAGGCGCCGCAGCACTTCCATTTCTCGGTTGGAGAGACTGGCCAGGCGCACTGGCTCGC > 1:54893/1‑149 CCATGATACGGCCCCGGTAGGTGCTGATGGTCTTGGCGCTGAGGTTCATGCAAGTGCCGATGTTCTTGTTGTTCTCGCCGCGCGCGAGGCGCCGCAGCACTTCCATTTCTCGGTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTC > 3:205267/1‑148 CCATGATACGGCCCCGGTAGGTGCTGATGGTCTTGGCGCTGAGGTTCATGCAAGTGCCGATGTTCTTGTTGTTCTCGCCGCGCGCGAGGCGCCGCAGCACTTCCATTTCTCGGTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTC > 5:81212/1‑148 GTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATC < 7:301268/127‑1 GTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATC > 8:301268/1‑127 GTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAA < 1:310429/90‑1 GTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAA > 2:310429/1‑90 TTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCAT > 5:104460/1‑149 TCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGA > 8:79841/1‑148 TCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAAT > 7:267253/1‑149 AACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGT > 1:152695/1‑149 AACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGT < 6:104460/149‑1 CTTTTCCATGATACGGCCCCGGTAGGTGCTGATGGTCTTGGCGCTGAGGTTCATGCAAGTGCCGATGTTCTTGTTGTTCTCGCCGCGCGCGAGGCGCCGCAGCACTTCCATTTCTCGGTTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3861004‑3860850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGT > NC_002947/3860886‑3861033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |