New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3860850 =59 (1.090)5 (0.100) 4/246 NT 8.1% coding (401/615 nt) PP_3412 LuxR family transcriptional regulator
?NC_002947 3860886 = 58 (1.130)coding (437/615 nt) PP_3412 LuxR family transcriptional regulator

ATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGTC  >  NC_002947/3860738‑3861034
                                                                                                                                                    |                                                                                                                                                    
atgatacggccccggtaggtgctgatggtcttggcgctgaggttcatgcaagtgccgatgttcttgttgttctcgccgcgcgcgaggcgccgcagcacttccatttctcggtTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCaa                                                                                                                                                      >  5:104460‑M1/113‑149 (MQ=255)
aTAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCaa                                                                                                                                                      <  7:29606/149‑1 (MQ=255)
    gTGCCTTCGACACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGATATTCGACCTTTCCGCAATTGTCCGACAACAGCAACTCGATGAAGAGCGCGCCAGTGCGCCTGGACAGTCTCTCCAAcc                                                                                                                                                    >  1:287809/1‑147 (MQ=255)
       ccTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCgaga                                                                                                                                                >  1:97288/1‑148 (MQ=255)
        cTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGaaa                                                                                                                                              <  1:43401/149‑1 (MQ=255)
         ttCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAAt                                                                                                                                             >  3:133975/1‑149 (MQ=255)
         ttCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAAt                                                                                                                                             >  6:81212/1‑149 (MQ=255)
            gTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCga                                                                                                                                                  >  3:4486/1‑141 (MQ=255)
            gTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCga                                                                                                                                                  <  4:4486/141‑1 (MQ=255)
             tCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGaa                                                                                                                                         <  2:331639/149‑1 (MQ=255)
                 cAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTCGCCAGTCTCTCCAACCGAGAAATGGAAGtgc                                                                                                                                     >  2:322930/1‑149 (MQ=255)
                 cAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCCGGCCAGTCTCTCCAACCGAGAAATGGAAGtgc                                                                                                                                     >  4:4333/1‑149 (MQ=255)
                   aGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGtgctg                                                                                                                                   >  3:82751/1‑149 (MQ=255)
                       gatggtcttggcgctgaggttcatgcaagtgccgatgttcttgttgttctcgccgcgcgcgaggcgccgcagcacttccatttctcggtTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAAc                                                                                                                                                     >  8:301268‑M1/90‑127 (MQ=255)
                       gatggtcttggcgctgaggttcatgcaagtgccgatgttcttgttgttctcgccgcgcgcgaggcgccgcagcacttccatttctcggtTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAAc                                                                                                                                                     <  7:301268‑M1/38‑1 (MQ=255)
                       agagGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTgcggc                                                                                                                               >  7:180881/1‑149 (MQ=255)
                           gACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCt                                                                                                                           >  3:231531/1‑149 (MQ=255)
                           gACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCt                                                                                                                           >  3:321484/1‑149 (MQ=255)
                            aCCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCTGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTc                                                                                                                          >  1:69589/1‑149 (MQ=255)
                            aCCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTc                                                                                                                          <  2:97288/149‑1 (MQ=255)
                             ccACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGtgctgc                                                                                                                                  <  6:192475/140‑1 (MQ=255)
                             ccACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGtgctgc                                                                                                                                  >  5:192475/1‑140 (MQ=255)
                               aCGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATATCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTcgcg                                                                                                                       <  6:139513/149‑1 (MQ=255)
                                cGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTcgcgc                                                                                                                      <  4:231531/149‑1 (MQ=255)
                                     cccTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCgcggc                                                                                                                 <  4:82751/149‑1 (MQ=255)
                                       ctgctgTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCgcggc                                                                                                                 >  5:142824/1‑147 (MQ=255)
                                          ctgTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGaa                                                                                                            <  6:206919/149‑1 (MQ=255)
                                          ctgTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGaa                                                                                                            <  8:180881/149‑1 (MQ=255)
                                             ttCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGaacaa                                                                                                         >  8:173142/1‑149 (MQ=255)
                                              tCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGaacaa                                                                                                         >  6:310906/1‑148 (MQ=255)
                                                gCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGaacaac                                                                                                        >  4:245331/1‑147 (MQ=255)
                                                gCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAAcaacaa                                                                                                      <  7:173142/149‑1 (MQ=255)
                                                   cTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGa                                                                                                    >  8:324282/1‑148 (MQ=255)
                                                      aaGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACAt                                                                                                <  4:133975/149‑1 (MQ=255)
                                                        ggCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCgcggc                                                                                                                 <  4:256849/130‑1 (MQ=255)
                                                        ggCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCgcggc                                                                                                                 >  3:256849/1‑130 (MQ=255)
                                                           ccTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCCGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCa                                                                                           <  3:4333/149‑1 (MQ=255)
                                                            ttcttgttgttctcgccgcgcgcgaggcgccgcagcacttccatttctcggtTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAAc                                                                                                                                                     >  2:310429‑M1/53‑90 (MQ=255)
                                                            ttcttgttgttctcgccgcgcgcgaggcgccgcagcacttccatttctcggtTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAAc                                                                                                                                                     <  1:310429‑M1/38‑1 (MQ=255)
                                                                 cAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCa                                                                                     <  6:324995/149‑1 (MQ=255)
                                                                 cAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCa                                                                                     >  3:180309/1‑149 (MQ=255)
                                                                 cAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCa                                                                                     <  5:328380/149‑1 (MQ=255)
                                                                 cAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCa                                                                                     <  3:245331/149‑1 (MQ=255)
                                                                 cAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTACAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCa                                                                                     >  7:214422/1‑149 (MQ=255)
                                                                   aaGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATg                                                                                   <  4:180309/149‑1 (MQ=255)
                                                                     ggTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGaa                                                                                 <  5:312781/149‑1 (MQ=255)
                                                                          ttCGACCTTTCCGCAAATGTCGGTCAACAGCATCTCGCTGGAGAGGGAGCCAGTGCGCCTGGCCAGTCTCTGCTACCGAGAAATGGATGTGCTGCGGCGCCTCGCGCGCGGCGAGAAGTACAAGTACATCGGCTCTTGCATGAACCtga                                                                            <  2:287809/149‑3 (MQ=255)
                                                                             gACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAgcg                                                                         >  3:241214/1‑149 (MQ=255)
                                                                                  ttCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGcc                                                                       >  3:259125/1‑146 (MQ=255)
                                                                                   tCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCaa                                                                     <  7:324282/147‑1 (MQ=255)
                                                                                      gCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGAcc                                                                 >  4:205267/1‑148 (MQ=255)
                                                                                            gTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCa                                                          >  7:8165/1‑149 (MQ=255)
                                                                                                   aaCAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCg                                                   >  6:122004/1‑149 (MQ=255)
                                                                                                   aaCAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCg                                                   >  2:80722/1‑149 (MQ=255)
                                                                                                    aCAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCgg                                                  <  4:321484/149‑1 (MQ=255)
                                                                                                    aCAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCgg                                                  <  1:80722/149‑1 (MQ=255)
                                                                                                     cAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGgcgc                                                                                                                             >  4:283333/1‑73 (MQ=255)
                                                                                                     cAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGgcgc                                                                                                                             <  3:283333/73‑1 (MQ=255)
                                                                                                        cAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGcc                                              >  4:169249/1‑149 (MQ=255)
                                                                                                          aCTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAAc                                                                                >  6:110235/1‑113 (MQ=255)
                                                                                                          aCTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAAc                                                                                <  5:110235/113‑1 (MQ=255)
                                                                                                              gttggagagactggccaggcgcactggctcgctctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGaa                                                                                                   <  1:310429‑M2/52‑1 (MQ=255)
                                                                                                              gttggagagactggccaggcgcactggctcgctctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGaa                                                                                                   >  2:310429‑M2/39‑90 (MQ=255)
                                                                                                              gttggagagactggccaggcgcactggctcgctctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATc                                                              >  8:301268‑M2/39‑127 (MQ=255)
                                                                                                              gttggagagactggccaggcgcactggctcgctctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATc                                                              <  7:301268‑M2/89‑1 (MQ=255)
                                                                                                              gCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATc                                         <  8:214422/148‑1 (MQ=255)
                                                                                                               ttggagagactggccaggcgcactggctcgctctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCAt                                       >  5:104460‑M2/38‑149 (MQ=255)
                                                                                                               cTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCAt                                       <  2:69589/149‑1 (MQ=255)
                                                                                                                  GAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATgg                                     >  5:81212‑M1/1‑148 (MQ=255)
                                                                                                                  GAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATgg                                     >  3:205267‑M1/1‑148 (MQ=255)
                                                                                                                      GCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAg                                >  1:54893‑M1/1‑149 (MQ=255)
                                                                                                                          gcCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCa                            <  6:142824/149‑1 (MQ=255)
                                                                                                                              gTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGAc                        <  4:241214/149‑1 (MQ=255)
                                                                                                                              gTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCCCCGCGAGAACAACAAGAACATAGGCACTTGCATGAACCTAAGCGCAAACACCATCAGCACCTACCGCGGCCGTATCATGGAAAAGCTCAAGAc                        >  5:346109/1‑149 (MQ=255)
                                                                                                                                    cTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGGACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGt                   >  5:298137/1‑148 (MQ=255)
                                                                                                                                        ccAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACtg              >  4:122188/1‑149 (MQ=255)
                                                                                                                                          aGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCTAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACtggt            <  1:322930/149‑1 (MQ=255)
                                                                                                                                            tctctcCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCATCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACtggtg           >  4:211900/1‑148 (MQ=255)
                                                                                                                                            tctctcCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACtggtgg          <  1:35810/149‑1 (MQ=255)
                                                                                                                                              tctccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGa         >  8:79841‑M2/7‑148 (MQ=255)
                                                                                                                                                tccaACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAAt      >  7:267253‑M2/5‑149 (MQ=255)
                                                                                                                                                   aACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGt   >  1:152695‑M2/2‑149 (MQ=255)
                                                                                                                                                   aACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGt   <  6:104460‑M2/148‑1 (MQ=255)
                                                                                                                                                    aCCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGTc  <  8:267253/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGCGAGCCAGTGCGCCTGGCCAGTCTCTCCAACCGAGAAATGGAAGTGCTGCGGCGCCTCGCGCGCGGCGAGAACAACAAGAACATCGGCACTTGCATGAACCTCAGCGCCAAGACCATCAGCACCTACCGGGGCCGTATCATGGAAAAGCTCAAGACCGAGTCACTGGTGGAAATGGTC  >  NC_002947/3860738‑3861034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.