New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3860856	60 (1.110)	5 (0.100)	4/246	NT	8.0%	coding (407/615 nt)	PP_3412	LuxR family transcriptional regulator
	?	NC_002947	= 3860878	58 (1.130)					coding (429/615 nt)	PP_3412	LuxR family transcriptional regulator

TGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3860715‑3860856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagagACTGGCCAGGCGCACTGGCTCGCTCTCCAGCGAGTTGCTGTTGACCGACATTTGCGGAAAGGTCGAATAACCTTTGGTCAGGGCCTTGAGGGCGAACAGCAGGGCCTCGTGGTCCTCTTCCTTGGTGACGAAGGCACCTATCCCG  <  NC_002947/3860878‑3860734                                                                                                                                                                                                                                                                                                 TGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTGCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGACTGGC                                                                                                                                             >  7:48664/1‑148                         TAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAGC                                                                                                                    <  7:99731/149‑1                           GGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTGCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAGCGA                                                                                                                  <  8:48664/149‑1                                             GAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAGC                                                                                                                    >  3:70685/1‑129                                             GAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAGC                                                                                                                    <  4:70685/129‑1                                                                                                                                          GAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAGCGAGTTGCTGTTGACCGACATTTGCGGAAAGGTCGAATAACCTTTGGTCAGGGCCTTGAGGGCGAACAGCAGGGCCTCGTGGTCCTCTTCCTTGGTGACGAAG              <  3:263009/138‑1                                                                                                                                          GAGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAGCGAGTTGCTGTTGACCGACATTTGCGGAAAGGTCGAATAACCTTTGGTCAGGGCCTTGAGGGCGAACAGCAGGGCCTCGTGGTCCTCTTCCTTGGTGACGAAG              >  4:263009/1‑138                                                                                                                                           AGAGACTGGCCAGGCGCACTGGCTCGCTCTCCAGCGAGTTGCTGTTGACCGACATTTGCGGAAAGGTCGAATAACCTTTGGTCAGGGCCTTGAGGGCGAACAGCAGGGCCTCGTGGTCCTCTTCCTTGGTGACGAAGGCACCTATCCCG  <  5:206919/149‑1                                                                                                                                                                                                                                                                                                 TGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACAGCAACTCGCTGGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3860715‑3860856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagagACTGGCCAGGCGCACTGGCTCGCTCTCCAGCGAGTTGCTGTTGACCGACATTTGCGGAAAGGTCGAATAACCTTTGGTCAGGGCCTTGAGGGCGAACAGCAGGGCCTCGTGGTCCTCTTCCTTGGTGACGAAGGCACCTATCCCG  <  NC_002947/3860878‑3860734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.