New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3962988	40 (0.740)	5 (0.100)	5/238	NT	11.3%	intergenic (+34/+83)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator
	?	NC_002947	= 3963028	42 (0.850)					intergenic (+74/+43)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator

ATCTGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3962833‑3962988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCA  <  NC_002947/3963028‑3962891                                                                                                                                                                                                                                                                                                        ATCTGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGG                                                                                                                                                     >  1:152337/1‑147   CTGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATACGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGC                                                                                                                                                 >  2:209566/1‑149    TGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCG                                                                                                                                                >  5:89026/1‑149                                         GCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTC                                                                                                            >  2:245989/1‑148                                                          ATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGG                                                                                                                                              <  3:24138/97‑1                                                          ATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGG                                                                                                                                              >  4:24138/1‑97                                                           TGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCCCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCACCCGC                                                                                             <  1:245989/145‑1                                                               GGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAATCTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAA                                                                                     <  3:217504/149‑1                                                                            TCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCG                                                                               <  1:68749/142‑1                                                                            TCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCG                                                                               >  2:68749/1‑142                                                                                                                                                   GGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCCGCATCCGCTGGATCTCGCTCGACCCTTCA  >  4:299674/1‑148                                                                                                                                                   GGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCA  >  3:75506/1‑148                                                                                                                                                   GGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTC   >  7:151042/1‑147                                                                                                                                                   GGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTC   <  8:151042/147‑1                                                                                                                                                                                                                                                                                                        ATCTGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3962833‑3962988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCA  <  NC_002947/3963028‑3962891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.