New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 416470437 (0.680)5 (0.100) 5/240 NT 13.5% intergenic (+54/+63) PP_3665/PP_3666 AraC family transcriptional regulator/MHS family metabolite MFS transporter
?NC_002947 = 4164732 30 (0.600)intergenic (+82/+35) PP_3665/PP_3666 AraC family transcriptional regulator/MHS family metabolite MFS transporter

GCCTGTGGCTTCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4164552‑4164704
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcctacaACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAGCAATGCCAATACCTGACCCAACTCAGTGGAGAGAGGCCTGCCGCCGCTCCCCTAAAGGCGACAGCCCGAAGAACCGGCTATAACTCTT  <  NC_002947/4164732‑4164585
                                                                                                                                                                                                                                                                                                             
GCCTGTGGCTTCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCTTGCCCGCGaa                                                                                                                                                          <  8:227339/149‑3
     TGGCTTCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCTTGCCCGCGaagag                                                                                                                                                       <  3:163645/147‑6
         TTCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAACGGC                                                                                                                                                 >  1:203586/1‑149
                                CAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGC                                                                                                                           <  2:203586/148‑1
                                CAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC                                                                                                                                                           <  6:314182/116‑1
                                       ctTAGCCGGGTCATCGGGCGGGCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGC                                                                                                                   <  2:297535/147‑1
                                          AGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCAACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAACGGAATGAGGCGGACCACCGATGTTCGTGTAGGC                                                                                                                   >  1:297535/1‑146
                                           GCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCG                                                                                                                  >  1:83478/1‑146
                                           GCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCG                                                                                                                  <  2:83478/146‑1
                                                                                                                                                    CTACAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAGCAATGCCAATACCTGACCCAACTCAGTGGAGAGAGGCCTGCCGCCGCTCCCCTAAAGGCGACAGCCCGAAGAACCGGCTATAAC      >  5:252621/1‑149
                                                                                                                                                       CAACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCACCAATGCCAATACCTGACCCAACTCAGTGTAGAGAGGCCTGCCGCCGCTCCCCTAAAGGCGACAGCCCGAAGAACCGGCTATAACTC    <  5:118069/148‑1
                                                                                                                                                        AACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAGCAATGCCAATACCTGACCCAACTCAGTGGAGAGAGGCCTGCCGCCGCTCCCCTAAAGGCGACAGCCCGAAGAACCGGCTATAACTCTT  >  1:316137/1‑149
                                                                                                                                                                                                                                                                                                             
GCCTGTGGCTTCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4164552‑4164704
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcctacaACGGCCTGTGGCGGACCACCGATGTGCGTGTAGGCGCGGGCTTGCCCGCGAAGAGGCCAGCAATGCCAATACCTGACCCAACTCAGTGGAGAGAGGCCTGCCGCCGCTCCCCTAAAGGCGACAGCCCGAAGAACCGGCTATAACTCTT  <  NC_002947/4164732‑4164585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.