New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4164704	37 (0.680)	5 (0.100)	5/240	NT	13.5%	intergenic (+54/+63)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
	?	NC_002947	= 4164732	30 (0.600)					intergenic (+82/+35)	PP_3665/PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter

TTCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTG  >  NC_002947/4164561‑4164852                                                                                                                                                |                                                                                                                                                     ttCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAacggc                                                                                                                                                 >  1:203586‑M1/1‑144 (MQ=255)  tCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGcaca                                                                                                                                                >  8:63191/1‑149 (MQ=255)     gTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCg                                                                                                                                             <  4:237013/149‑1 (MQ=255)       tCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCggt                                                                                                                                           >  5:176489/1‑149 (MQ=255)        cGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCggt                                                                                                                                           <  5:216054/148‑1 (MQ=255)            tGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTcc                                                                                                                                      >  3:59067/1‑149 (MQ=255)               gcATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTCCACGCACATCGGTGGTCCGcc                                                                                                                                   >  4:36605/1‑149 (MQ=255)                        cAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAacggcctgtggcggaccaccgatgtgc                                                                                                                           <  2:203586‑M1/148‑28 (MQ=255)                        cAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGt                                                                                                                          >  2:316137/1‑149 (MQ=255)                         aaGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTt                                                                                                                         >  1:316137‑M2/1‑148 (MQ=255)                           gagTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTACACTGAGTTGGGTCAGGTATTGGCATTGGTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTtg                                                                                                                        <  5:118069‑M2/148‑3 (MQ=255)                             gTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTtgtag                                                                                                                     >  5:252621‑M2/1‑144 (MQ=255)                               cttagcCGGGTCATCGGGCGGGCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAacggcctgtggcggaccaccgatgtgcgtgtaggc                                                                                                                   <  2:297535‑M1/147‑36 (MQ=255)                                  aGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCAACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAacggaatgaggcggaccaccgatgttcgtgtaggc                                                                                                                   >  1:297535‑M1/1‑111 (MQ=255)                                   gCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAacggcctgtggcggaccaccgatgtgcgtgtaggcg                                                                                                                  <  2:83478‑M1/146‑37 (MQ=255)                                   gCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACAacggcctgtggcggaccaccgatgtgcgtgtaggcg                                                                                                                  >  1:83478‑M1/1‑110 (MQ=255)                                    ccGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGt                                                                                                               >  6:191766/1‑148 (MQ=255)                                    ccGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGt                                                                                                               <  5:191766/148‑1 (MQ=255)                                     cGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTga                                                                                                             <  7:63191/149‑1 (MQ=255)                                           ttcGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCggt                                                                                                                                           >  8:29085/1‑113 (MQ=255)                                           ttcGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCggt                                                                                                                                           <  7:29085/113‑1 (MQ=255)                                             cGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAgaagaa                                                                                                       <  2:226699/147‑1 (MQ=255)                                                 cTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGt                                                                                                 >  2:72646/1‑149 (MQ=255)                                                  tGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTg                                                                                                >  5:259991/1‑149 (MQ=255)                                                         tttAGGGGAGCGGCGGCAGGCGTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTc                                                                                          >  3:56181/1‑148 (MQ=255)                                                            aGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAAc                                                                                       <  7:24545/148‑1 (MQ=255)                                                                gAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATc                                                                                  >  5:61536/1‑149 (MQ=255)                                                                     gcggcAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCaa                                                                             <  6:61536/149‑1 (MQ=255)                                                                                ctctcCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCggt                                                                                                                                           >  6:115681/1‑76 (MQ=255)                                                                                ctctcCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCggt                                                                                                                                           <  5:115681/76‑1 (MQ=255)                                                                                ctctcCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAAc                                                                                       <  5:179199/128‑1 (MQ=255)                                                                                ctctcCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAAc                                                                                       >  6:179199/1‑128 (MQ=255)                                                                                            ttGTGTCAGGTATTGGCATTGCTGGCCTCTTCGCGTGAAAGCGCGCGCCTACAAGCACATCGGTGGTCCGCCACAGGCCGTAGTAGGCGCGTGAGTGGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCTCCGTCTCCCGa                                                      <  6:118069/149‑1 (MQ=255)                                                                                            ttGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGa                                                      <  1:72646/149‑1 (MQ=255)                                                                                            ttGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGa                                                      <  4:59067/149‑1 (MQ=255)                                                                                               ggTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGacac                                                   <  6:259991/149‑1 (MQ=255)                                                                                                  cAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATc                                                <  6:176489/149‑1 (MQ=255)                                                                                                        ttGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATg                                          >  4:69776/1‑149 (MQ=255)                                                                                                            cATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTgag                                                                                                            <  4:83873/79‑1 (MQ=255)                                                                                                            cATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTgag                                                                                                            >  3:83873/1‑79 (MQ=255)                                                                                                                  tGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAgcg                                >  4:145072/1‑149 (MQ=255)                                                                                                                  tGGCCTCTTCGCGGGCAAGCAAGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTACAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAgcg                                >  6:221102/1‑149 (MQ=255)                                                                                                                       tctTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGccac                            >  5:290540/1‑148 (MQ=255)                                                                                                                         ttCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAg                         >  5:206152/1‑149 (MQ=255)                                                                                                                           cgcgGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGtg                       >  3:133191/1‑149 (MQ=255)                                                                                                                            gcgGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGtg                       <  4:56181/148‑1 (MQ=255)                                                                                                                                         cgcCTACACGCACATCGGTGGTCCGCCACAGGCCGTtgtaggcgcgggcttgcccgcgaagaggccagcaatgccaatacctgacccaactcagtggagagaggcctgccgccgctcccctaaaggcgacagcccgaagaaccggc            <  2:83478‑M2/146‑111 (MQ=255)                                                                                                                                         cgcCTACACGCACATCGGTGGTCCGCCACAGGCCGTtgtaggcgcgggcttgcccgcgaagaggccagcaatgccaatacctgacccaactcagtggagagaggcctgccgccgctcccctaaaggcgacagcccgaagaaccggc            >  1:83478‑M2/1‑36 (MQ=255)                                                                                                                                          gcCTACACGCACATCGGTGGTCCGCCACAGGCCGTtgtaggcgcgggcttgcccgcgaagaggccagcaatgccaatacctgacccaactcagtggagagaggcctgccgccgctcccctaaaggcgcccgcccgatgacccggctaag        <  2:297535‑M2/149‑115 (MQ=255)                                                                                                                                          gcCTACACGAACATCGGTGGTCCGCCTCATTCCGTtgtaggcgcgggcttgcccgcgaagaggccagcaatgccaatacctgacccaactcagttgagagaggcctgccgccgctcccctaaaggcgacagcccgaagaaccggct           >  1:297535‑M2/1‑35 (MQ=255)                                                                                                                                            cTACAacggcctgtggcggaccaccgatgtgcgtgtaggcgcgggcttgcccgcgaagaggccagcaatgccaatacctgacccaactcagtggagagaggcctgccgccgctcccctaaaggcgacagcccgaagaaccggctataac      >  5:252621‑M1/1‑5 (MQ=255)                                                                                                                                            cTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATATTCAAGGGCCGCGTGCGCCGTATCCCGACACAACAGCATGGCCACCAGCGCCACAAGTCCTGCCGCCAGCAAGTaa      >  8:48239/1‑148 (MQ=255)                                                                                                                                               cacGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCt   >  3:68963/1‑149 (MQ=255)                                                                                                                                               cAacggcctgtggcggaccaccgatgtgcgtgtaggcgcgggcttgcccgcgaagaggccaccaatgccaatacctgacccaactcagtgtagagaggcctgccgccgctcccctaaaggcgacagcccgaagaaccggctataactc    <  5:118069‑M1/148‑147 (MQ=255)                                                                                                                                                acGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGTCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTg  <  8:311479/149‑1 (MQ=255)                                                                                                                                                acGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTg  >  5:221366/1‑149 (MQ=255)                                                                                                                                                aacggcctgtggcggaccaccgatgtgcgtgtaggcgcgggcttgcccgcgaagaggccagcaatgccaatacctgacccaactcagtggagagaggcctgccgccgctcccctaaaggcgacagcccgaagaaccggctataactctt  >  1:316137‑M1/1‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     TTCAGTTCGCCTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTG  >  NC_002947/4164561‑4164852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.