New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4266108 =	55 (1.020)	5 (0.100)	4/250	NT	8.9%	coding (351/714 nt)	PP_3738	transcriptional regulator VanR
	?	NC_002947	4266132 =	50 (0.960)					coding (327/714 nt)	PP_3738	transcriptional regulator VanR

TCGGTCAGCGCCGATGACATCGCGGGTGCGGTCGAGGTGCGCGGTGTGCTGGAGGGGTTGGCGGCGCGTCAGGCTGCAGAACGTGGCTTGTCGGTGCAAGCACGCGCTGCGTTGCAACAATGCCTGGTCGACGGCGATCAGCTGTTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4266257‑4266108 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgacCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCGGC  >  NC_002947/4266132‑4266277                                                                                                                                                                                                                                                                                                           TCGGTCAGCGCCGATGACATCGCGGGTGCGGTCGAGGTGCGCGGTGTGCTGGAGGGGTTGGCGGCGCGTCAGGCTGCAGAACGTGGCTTGTCGGTGCAAGCACGCGCTGCGTTGCAACAATGCCTGGTCGACGGCGATCAGCTGTTCGA                                                                                                                                                      >  3:117518/1‑149                                                                                                                   CAACAATGCCTGGTCGACGGCGATCAGCTGTTCGACAAGGGCTTTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCA                                    >  1:248046/1‑149                                                                                                                            CTGGTCGACGGCGATCAGCTGTTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGC                                                                     <  1:87673/106‑1                                                                                                                            CTGGTCGACGGCGATCAGCTGTTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGC                                                                     >  2:87673/1‑106                                                                                                                            CTGGTCGACGGCGATCAGCTGTTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCA                                                                                                >  7:121043/1‑79                                                                                                                            CTGGTCGACGGCGATCAGCTGTTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCA                                                                                                <  8:121043/79‑1                                                                                                                                                    GACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCGGC  >  7:97946/1‑149                                                                                                                                                     ACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCG    >  7:261072/1‑146                                                                                                                                                     ACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCCCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCG    <  8:261072/146‑1                                                                                                                                                                                                                                                                                                           TCGGTCAGCGCCGATGACATCGCGGGTGCGGTCGAGGTGCGCGGTGTGCTGGAGGGGTTGGCGGCGCGTCAGGCTGCAGAACGTGGCTTGTCGGTGCAAGCACGCGCTGCGTTGCAACAATGCCTGGTCGACGGCGATCAGCTGTTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4266257‑4266108 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgacCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCGGC  >  NC_002947/4266132‑4266277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.