| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4266108 = | 55 (1.020) | 5 (0.100) | 4/250 | NT | 8.9% | coding (351/714 nt) | PP_3738 | transcriptional regulator VanR |
| ? | NC_002947 | 4266132 = | 50 (0.960) | coding (327/714 nt) | PP_3738 | transcriptional regulator VanR | |||||
TTGCGCGCCAGGGCAACGGCAATGGCCGGGTTGTGGCTGGCGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCGGC > NC_002947/4265992‑4266277 | ttGCGCGCCAGGGCAACGGCAATGGCCGGGTTGTGGCTGGCGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCAttg < 6:128283/149‑1 (MQ=255) gcgcgcCAGGGCAACGGCAATGGCCGGGTTGTGGCTGGCGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCAttgt < 7:48155/148‑1 (MQ=255) tgacatcgcgggtgcggtcgaggtgcgcggtgtgctggaggggttggcggcgcgtcaggctgcagaacgtggcttgtcggtgcaagcacgcgctgcgttgcaacaaagcccttGTCGAACAGCTGATCGCCGTCGACCA‑GGCAttgttg > 1:248046‑M1/114‑149 (MQ=255) aGGGCAACGGCAATGGCCGGGTTGTGGCTGGCGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACg > 4:54228/1‑148 (MQ=255) aaCGGCAATGGCCGGGTTGTGGCTGGCGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAtcgc > 7:230030/1‑149 (MQ=255) ggCAATGGCCGGGTTGTGGCTGGCGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTg < 8:164793/149‑1 (MQ=255) tggctggcGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGcc < 6:96338/149‑1 (MQ=255) tggctggcGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGc < 3:54228/148‑1 (MQ=255) gctggcGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCAc > 1:88973/1‑149 (MQ=255) gctggaggggttggcggcgcgtcaggctgcagaacgtggcttgtcggtgcaagcacgcgctgcgttgcaacaatgcctgGTCGAACAGCTGATCGCCGTCGACCA‑g < 1:87673‑M1/27‑1 (MQ=255) gctggaggggttggcggcgcgtcaggctgcagaacgtggcttgtcggtgcaagcacgcgctgcgttgcaacaatgcctgGTCGAACAGCTGATCGCCGTCGACCA‑g > 2:87673‑M1/80‑106 (MQ=255) cGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCAttgttg > 3:32329/1‑112 (MQ=255) cGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCAttgttg < 4:32329/112‑1 (MQ=255) atgatCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGc > 2:211619/1‑149 (MQ=255) tgatCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGAGCGTGCTTGCACCGACAAGCCACGTTCTGCAGcc > 5:9658/1‑149 (MQ=255) cTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTg < 1:169262/117‑1 (MQ=255) cTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTg > 2:169262/1‑117 (MQ=255) cTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGc < 2:255063/118‑1 (MQ=255) cTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGc > 1:255063/1‑118 (MQ=255) gatgaAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGcgcc > 6:106274/1‑149 (MQ=255) aGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCt > 5:187184/1‑135 (MQ=255) aGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCt < 6:187184/135‑1 (MQ=255) aGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAAc < 2:88973/149‑1 (MQ=255) aGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAAc < 3:181611/149‑1 (MQ=255) cgcATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGAACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAAccc > 1:6874/1‑149 (MQ=255) cgcATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGAACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAAccc > 1:1334/1‑149 (MQ=255) tgcagaacgtggcttgtcggtgcaagcacgcgctgcgttgcaacaatgcctgGTCGAACAGCTGATCGCCGTCGACCA‑g > 7:121043‑M1/53‑79 (MQ=255) tgcagaacgtggcttgtcggtgcaagcacgcgctgcgttgcaacaatgcctgGTCGAACAGCTGATCGCCGTCGACCA‑g < 8:121043‑M1/27‑1 (MQ=255) gTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCt < 7:142778/121‑1 (MQ=255) gTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCt > 8:142778/1‑121 (MQ=255) ttCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCa < 5:106274/148‑1 (MQ=255) ttCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAg < 3:237481/149‑1 (MQ=255) tCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACAA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCa > 4:221211/1‑122 (MQ=255) aGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGcac < 1:211619/149‑1 (MQ=255) gATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCgcgc > 8:267924/1‑149 (MQ=255) aTAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCa > 5:40130/1‑137 (MQ=255) aTAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCa < 6:40130/137‑1 (MQ=255) aCCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTc > 4:117518/1‑149 (MQ=255) cTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCaa > 1:278053/1‑69 (MQ=255) cTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCaa < 2:278053/69‑1 (MQ=255) cTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGAACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGa < 2:6874/149‑1 (MQ=255) cTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGAACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGa < 2:1334/149‑1 (MQ=255) tGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGcc > 8:142940/1‑108 (MQ=255) tGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGcc < 7:142940/108‑1 (MQ=255) gCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGAcc > 3:94815/1‑149 (MQ=255) aGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCa < 7:267924/149‑1 (MQ=255) gtcgtcTGCGCTCACAAAGCCCTAGTCGAACAGCTGAGCGCCGGCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCAc < 8:157489/149‑1 (MQ=255) tcTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCcgc < 4:94815/149‑1 (MQ=255) cGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGAt < 4:476/148‑1 (MQ=255) cTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCgcgc < 7:242762/126‑1 (MQ=255) cTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCgcgc > 8:242762/1‑126 (MQ=255) caacaatgcctggtcgacggcgatcagctgttcgacAAGGGCTTTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCa > 1:248046‑M2/37‑149 (MQ=255) cccTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCCACGCAGCGCGTGCTTGCACCGACACGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGAGCACCTCTACCGCACCCGCGAGGTCATCGGCGCt > 4:18564/1‑149 (MQ=255) ctggtcgacggcgatcagctgttcgacCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCa < 8:121043‑M2/52‑1 (MQ=255) ctggtcgacggcgatcagctgttcgacCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCa > 7:121043‑M2/28‑79 (MQ=255) ctggtcgacggcgatcagctgttcgacCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGc < 1:87673‑M2/79‑1 (MQ=255) ctggtcgacggcgatcagctgttcgacCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGc > 2:87673‑M2/28‑106 (MQ=255) TCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGa > 3:117518‑M1/1‑149 (MQ=255) aGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAAc < 7:178860/87‑1 (MQ=255) aGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAAc > 8:178860/1‑87 (MQ=255) tCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGaaa < 2:195430/149‑1 (MQ=255) cGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAAcccc > 2:13129/1‑149 (MQ=255) gacCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCGGc > 7:97946‑M2/4‑149 (MQ=255) acCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCg > 7:261072‑M2/3‑146 (MQ=255) acCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCCCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCg < 8:261072‑M2/144‑1 (MQ=255) | TTGCGCGCCAGGGCAACGGCAATGGCCGGGTTGTGGCTGGCGTCGATGATCACCTGATGAAAGCGCATGTTCAGGTCGTGATAGACCTGCAAGTCGTCTTCGCTCACAAAGCCCTTGTCGAACAGCTGATCGCCGTCGACCA‑GGCATTGTTGCAACGCAGCGCGTGCTTGCACCGACAAGCCACGTTCTGCAGCCTGACGCGCCGCCAACCCCTCCAGCACACCGCGCACCTCGACCGCACCCGCGATGTCATCGGCGCTGACCGAGCGCACCTGAAACCCCCGGC > NC_002947/4265992‑4266277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |