New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4504446	44 (0.810)	3 (0.060)	3/244	NT	6.2%	coding (204/360 nt)	PP_3994	TusC‑like tRNA 2‑thiouridine(34) synthase
	?	NC_002947	= 4504475	50 (0.990)					coding (233/360 nt)	PP_3994	TusC‑like tRNA 2‑thiouridine(34) synthase

CCCTCTGCCCGCGAGGCGCTGGACATCGCCCTGGCCGGCGGCGCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4504291‑4504446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggcgAACAGTTCTTCGACACCGAACATCGGCAACGCCTGCAGGTTGGCGGCCAGGTTCTTCTGTTGCACGGCGGCGGGTTGCTGGTCCGGCGCGAGCTGGAACACACCATCGTCGAGGAACAGCATGCCCAACGGCAGGTCGAACGCGCCGC  <  NC_002947/4504475‑4504328                                                                                                                                                                                                                                                                                                                  CCCTCTGCCCGCGAGGCGCTGGACATCGCCCTGGCCGGCGGCGCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCT                                                                                                                                                             >  4:5381/1‑149         CCGCGAGGCGCTGGACATCGCCCTGGCCGGCGGCGCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCA                                                                                                                                                          >  7:229248/1‑144         CCGCGAGGCGCTGGACATCGCCCTGGCCGGCGGCGCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCA                                                                                                                                                          <  8:229248/144‑1                                                CGACCTGCCATTGGGCATGCTGTTCCTCGACGATGGTGTGTACCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGAACAGTTCTTCGACACCGAACATCGGCAACGCCTGCAGG                                                                                                               <  8:267584/148‑1                                                                          TCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTACAGGCGAACAGTTCTTCGACACCGAACATCGGCAACGCCTG                                                                                                                   >  1:172641/1‑118                                                                          TCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTACAGGCGAACAGTTCTTCGACACCGAACATCGGCAACGCCTG                                                                                                                   <  2:172641/118‑1                                                                                                                                                      GCAGGCGAACAGTTCTTCGACACCGAACATCGGCAACGCCTGCAGGTTGGCGGCCAGGTTCTTCTGTTGCACGGCGGCGGGTTGCTGGTCCGGCGCGAGCTGGAACACACCATCGTCGAGGAACAGCATGCCCAACGGCAGGTCGAAC         <  7:130847/148‑1                                                                                                                                                        AGGCGAACAGTTCTTCGACACCGAACATCGGCAACGCCTGCAGGTTGGCGGCCAGGTTCTTCTGTTGCACGGCGGCGGGTTGCTGGTCCGGCGCGAGCTGGAACACACCATCGTCGAGGAACAGCATGCCCAACGGCAGGTCGAACGCG      >  3:256913/1‑149                                                                                                                                                            GAACAGTTCTTCGACACCGAACATCGGCAACGCCTGCAGGTTGGCGGCCAGGTTCTTCTGTTGCACGGCGGCGGGTTGCTGGTCCGGCGCGAGCTGGAACACACCATCGTCGAGGAACAGCATGCCCAACGGCAGGTCGAACGCGCCGC  >  3:5381/1‑149                                                                                                                                                                                                                                                                                                                  CCCTCTGCCCGCGAGGCGCTGGACATCGCCCTGGCCGGCGGCGCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4504291‑4504446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggcgAACAGTTCTTCGACACCGAACATCGGCAACGCCTGCAGGTTGGCGGCCAGGTTCTTCTGTTGCACGGCGGCGGGTTGCTGGTCCGGCGCGAGCTGGAACACACCATCGTCGAGGAACAGCATGCCCAACGGCAGGTCGAACGCGCCGC  <  NC_002947/4504475‑4504328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.