New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4504446 | 44 (0.810) | 3 (0.060) | 3/244 | NT | 6.2% | coding (204/360 nt) | PP_3994 | TusC‑like tRNA 2‑thiouridine(34) synthase |
? | NC_002947 | = 4504475 | 50 (0.990) | coding (233/360 nt) | PP_3994 | TusC‑like tRNA 2‑thiouridine(34) synthase |
GCGGCGCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATT > NC_002947/4504328‑4504622 | gcggcgCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTc > 3:5381‑M2/1‑148 (MQ=255) cgcgTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTcgcct > 3:256913‑M2/1‑144 (MQ=255) gTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTcgcctgc < 7:130847‑M2/148‑8 (MQ=255) gCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCccgc > 7:161197/1‑149 (MQ=255) tattCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGAGGTTCGGGTGCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGc > 6:336234/3‑149 (MQ=255) gTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTg‑g < 1:203840/137‑1 (MQ=255) gTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTg‑g > 2:203840/1‑137 (MQ=255) ttCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCt < 8:130847/149‑1 (MQ=255) cTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTgg > 8:288690/1‑148 (MQ=255) cTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTgg > 5:201330/1‑148 (MQ=255) gtgtgtTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAAcc < 8:161197/149‑1 (MQ=255) tgtTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTg < 7:158462/149‑1 (MQ=255) ttCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGgc < 8:123038/149‑1 (MQ=255) cTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGcc < 7:272983/149‑1 (MQ=255) gACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGt > 5:303130/1‑149 (MQ=255) aCCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTg < 6:303130/149‑1 (MQ=255) ccAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGc > 6:334677/1‑149 (MQ=255) gCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCCGGCGTTGCCGAGGTGCGGTGTCGAAGAACTGTTCGCCTGCACCCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAACCCCTGGCGCTGCCGGTGCAAGTGCTCg > 5:270533/1‑149 (MQ=255) cAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGa < 6:201330/149‑1 (MQ=255) cccGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCt < 8:279876/128‑1 (MQ=255) cccGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCt > 7:279876/1‑128 (MQ=255) cccGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGa < 7:29033/149‑1 (MQ=255) cgccgccgGGCCACCGCAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACg < 6:270533/149‑1 (MQ=255) cgccgTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAg > 4:188195/1‑149 (MQ=255) cgTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTGAACCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAgcg < 1:275658/149‑1 (MQ=255) aagaaCCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCt > 6:346816/1‑149 (MQ=255) gaaCCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGa < 7:175108/149‑1 (MQ=255) cTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGc > 2:148886/1‑149 (MQ=255) tGGCCGCCAACCTGCGGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGcc > 2:155842/1‑149 (MQ=255) tGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGcc > 3:252757/1‑149 (MQ=255) cgccAACCTGCGGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGtt < 1:155842/149‑1 (MQ=255) cgccAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGtt > 8:149317/1‑149 (MQ=255) ccTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTcgcctgcaggttggcggccaggttcttctgttgcacggcggcgggttgctggtccggcgcgagctggtacacaccatcgtcgaggaacagcatgcccaatggcaggtcg < 8:267584‑M2/148‑110 (MQ=255) cTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGAc > 5:36527/1‑147 (MQ=255) cAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTcgcctgtaggttggcggccaggttcttctgttgcacggcggcgggttgctggtccggcgcgagctggaacacaccatcgtcga > 1:172641‑M2/1‑35 (MQ=255) cAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTcgcctgtaggttggcggccaggttcttctgttgcacggcggcgggttgctggtccggcgcgagctggaacacaccatcgtcga < 2:172641‑M2/118‑84 (MQ=255) cAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAgg < 4:252757/148‑1 (MQ=255) gCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGa > 3:328904/1‑148 (MQ=255) gTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCGCTGATAGCCCGTTTCGACCAGGTGATaa < 1:196188/149‑1 (MQ=255) gTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATaa < 4:328904/149‑1 (MQ=255) ttGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAAc > 7:56422/1‑149 (MQ=255) gCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGc > 7:70122/1‑149 (MQ=255) gCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAACCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGAcc > 3:125455/1‑137 (MQ=255) gCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGGGGCCTGGCAACCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGAcc < 4:125455/137‑1 (MQ=255) cGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGctc < 7:288690/149‑1 (MQ=255) cGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCtgatg > 4:121068/1‑147 (MQ=255) ggTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGaa < 7:149317/148‑1 (MQ=255) gtgtCGAAGAACTGTTCGCCTGCAACCACGGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGa < 6:288309/149‑1 (MQ=255) aagaaCTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGCCGCAGCGCTGACCGCCCTGATAGCCCGTTTCGCCCAGGTGATAACGCTCTGATGAAGACCCTGc > 4:176318/1‑149 (MQ=255) aagaaCTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGct > 7:278511/1‑133 (MQ=255) aagaaCTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGct < 8:278511/133‑1 (MQ=255) aagaaCTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGc < 3:121068/149‑1 (MQ=255) aagaaCTGTTCGCCTGCAACCACAGCCTG‑GCCAGCAGTGCCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGATCTGATCAAGACCCTg > 5:91218/1‑148 (MQ=255) agaaCTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCa > 4:17974/1‑120 (MQ=255) agaaCTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCa < 3:17974/120‑1 (MQ=255) aaCTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATg > 6:40693/1‑149 (MQ=255) cTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGt > 5:144452/1‑148 (MQ=255) tGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCG‑AACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAAt > 6:58639/1‑149 (MQ=255) ttCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCG‑AACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAAtt < 5:58639/148‑1 (MQ=255) | GCGGCGCGTTCGACCTGCCGTTGGGCATGCTGTTCCTCGACGATGGTGTGTTCCAGCTCGCGCCGGACCAGCAACCCGCCGCCGTGCAACAGAAGAACCTGGCCGCCAACCTGCAGGCGTTGCCGATGTTCGGTGTCGAAGAACTGTTCGCCTGCAACCACAGCCTG‑GCCCGCCGTGGCCTGGCAGCCGAAACCCTGGCGCTGCCGGTGCAAGTGCTCGATGACGCAGCGCTGACCGCCCTGATAGCCCGTTTCGACCAGGTGATAACGCTCTGATGAAGACCCTGCATGTAATT > NC_002947/4504328‑4504622 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |