New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4699973	55 (1.020)	4 (0.080)	4/248	NT	6.9%	coding (715/2655 nt)	kdpD	sensor protein
	?	NC_002947	= 4700030	55 (1.070)					coding (658/2655 nt)	kdpD	sensor protein

TCACGCAGGCGGCCGTTGTCCACATGCACCAGGCTCCAGGGCAGGTGGCGGCGCTGGGCCACGCGGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4699822‑4699973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccATGCAGACCGCCGCTGCTCAGGTCGATGCCGACCTGGCCCACGGCTATCGTCAGCGCGGCCAGGAGGCGCCGGCCTTGCGCGGCCGGTTGCTGGTGGGCATAGACGGTGACGACCAGGCCGAACGCCTGGTGCGCCATGCCAGCCG  <  NC_002947/4700030‑4699885                                                                                                                                                                                                                                                                                                            TCACGCAGGCGGCCGTTGTCCACATGCACCAGGCTCCAGGGCAGGTGGCGGCGCTGGGCCACGCGGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTG                                                                                                                                                       >  8:109133/1‑149   ACGCAGGCGGCCGTTGTCCACATGCACCAGGCTCCAGGGCAGGTGGCGGCGCTGGGCCACGCGGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGC                                                                                                                                                     >  2:183731/1‑149   ACGCAGGCGGCCGTTGTCCACATGCACCAGGCTCCAGGGCAGGTGGCGGCGCTGGGCCACGCGGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGG                                                                                                                                                      <  3:91608/148‑1    CGCAGGCGGCCGTTGTCCACATGCACCAGGCTCCAGGGCAGGTGGCGGCGCTGGGCCACGCGGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGCC                                                                                                                                                    >  1:248556/1‑149                      ACATGCACCAGGCTCCAGGGCAGGTGGCGGCGCTGGGCCACGCGGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGCCATGCAGACCGCCGCTGC                                                                                                                                   >  1:50058/1‑148                                                                 GGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGCCATGCAGACCGCCGCTGCTCAGGTCGATGCCGACCTGGCCCACGGCTATCGTCAGCGCGGCC                                                                                       <  2:50058/149‑1                                                                                       TTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGCCATGCAGACCGCCGCTGCTC                                                                                                                                 <  7:119217/85‑1                                                                                       TTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGCCATGCAGACCGCCGCTGCTC                                                                                                                                 >  8:119217/1‑85                                                                                                                                                      GCCATGCAGACCGCCGCTGCTCAGGTCGATGCCGACCTGGCCCACGGCTATCGTCAGCGCGGCCAGGAGGCGCCGGCCTTGCGCGGCCGGTTGCTGGTGGGCATAGACGGTGACGACCAGGCCGAACGCCTGGTGCGCCATGCCAGCCG  >  1:154328/1‑149                                                                                                                                                        CATGCAGACCGCCGCTGCTCAGGTCGATGCCGACCTGGCCCACGGCTATCGTCAGCGCGGCCAGGAGGCGCCGGCCTTGCGCGGCCGGTTGCTGGTGGGCATAGACGGTGACGACCAGGCCGAACGCCTGGTGCGCCATGCCA      <  1:101830/143‑1                                                                                                                                                        CATGCAGACCGCCGCTGCTCAGGTCGATGCCGACCTGGCCCACGGCTATCGTCAGCGCGGCCAGGAGGCGCCGGCCTTGCGCGGCCGGTTGCTGGTGGGCATAGACGGTGACGACCAGGCCGAACGCCTGGTGCGCCATGCCA      >  2:101830/1‑143                                                                                                                                                                                                                                                                                                            TCACGCAGGCGGCCGTTGTCCACATGCACCAGGCTCCAGGGCAGGTGGCGGCGCTGGGCCACGCGGCTGGCATGGCGCACCAGGCGTTCGGCCTGGTCGTCACCGTCTATGCCCACCAGCAACCGGCCGCGCAAGGCCGGCGCCTCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4699822‑4699973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccATGCAGACCGCCGCTGCTCAGGTCGATGCCGACCTGGCCCACGGCTATCGTCAGCGCGGCCAGGAGGCGCCGGCCTTGCGCGGCCGGTTGCTGGTGGGCATAGACGGTGACGACCAGGCCGAACGCCTGGTGCGCCATGCCAGCCG  <  NC_002947/4700030‑4699885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.