| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4780240 = | 77 (1.420) | 6 (0.120) | 5/246 | NT | 7.8% | coding (7074/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
| ? | NC_002947 | 4780277 = | 69 (1.350) | coding (7037/7887 nt) | pvdJ | non‑ribosomal peptide synthetase | |||||
CGACGACGTGGCGCTGTACCGCGTGCGTGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4780390‑4780240‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATCGGCAGGTGCACGGAGCTTGCGTCATCACGCACGCGGTACAGCGCCAC > NC_002947/4780277‑4780383 CGACGACGTGGCGCTGTACCGCGTGCGTGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCG > 6:112423/1‑149CGACGACGTGGCGCTGTACCGCGTGCGTGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCC < 4:333372/148‑1 GACGACGTGGCGCTGTACCGCGTGCGTGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCG < 1:171811/148‑1 GACGACGTGGCGCTGTACCGCGTGCGTGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCG > 2:171811/1‑148 TGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCG > 7:13591/1‑122 TGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCG < 8:13591/122‑1 GAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGTGGCCGGGGCCGGCATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATC < 7:27557/111‑1 GAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGTGGCCGGGGCCGGCATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATC > 8:27557/1‑111 GAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCGGCATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATCGGCAGGTGCACGGAGCTTGCGTCAT > 7:155735/1‑130 GAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCGGCATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATCGGCAGGTGCACGGAGCTTGCGTCAT < 8:155735/130‑1 ATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCGGCATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATCGGCAGGTGCACGGAGCTTGCGTCATCACGCACGCGGTACAGCGCCAC > 1:122833/1‑146 ATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCGGCATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATCGGCAGGTGCACGGAGCTTGCGTCATCACGCACGCGGTACAGCGCCAC < 2:122833/146‑1 CGACGACGTGGCGCTGTACCGCGTGCGTGATGACGCAAGCTCCGTGCACCTGCCGATCGGTGCCGCGACCGAGCACAACCGCCTGCATGTGCTCAACGACCTGCTCGAACCGATGCCGGCCCGGGCCACCGGCGAGTTGCATGT‑‑‑‑‑‑GGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4780390‑4780240‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcATCGGTTCGAGCAGGTCGTTGAGCACATGCAGGCGGTTGTGCTCGGTCGCGGCACCGATCGGCAGGTGCACGGAGCTTGCGTCATCACGCACGCGGTACAGCGCCAC > NC_002947/4780277‑4780383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |