| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4902847 | 28 (0.520) | 4 (0.090) | 4/226 | NT | 12.6% | intergenic (+33/+86) | PP_4310/PP_4311 | hydantoin racemase/D‑amino acid dehydrogenase small subunit |
| ? | NC_002947 | = 4902910 | 31 (0.660) | intergenic (+96/+23) | PP_4310/PP_4311 | hydantoin racemase/D‑amino acid dehydrogenase small subunit | |||||
GATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4902683‑4902847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcggctAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTC < NC_002947/4902910‑4902763 GATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTAC > 4:329831/1‑149 GTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGC < 1:181300/149‑1 GTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGC < 5:208776/149‑1 GTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGC < 1:209234/149‑1 GTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGC < 4:46108/149‑1 GAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCT < 8:255392/149‑1 TGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCG > 2:106043/1‑149 GCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGC < 1:180413/149‑1 CATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTAAAGCCG > 2:89399/1‑149 CCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGG > 4:186319/1‑149 CACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGA < 3:186319/149‑1 GCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTAAAGCCGCTCCTACTAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCTGCC < 1:89399/149‑1 GGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCT > 3:329831/1‑149 TTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCC > 4:53103/1‑149 CGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCC < 3:53103/147‑1 GCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGT < 7:16414/148‑1 CGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGC < 2:199577/115‑1 CGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGC > 1:199577/1‑115 CGGCTAAACCCGCTCATACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCAACAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCca > 6:153410/1‑117 GCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCG > 4:61029/1‑149 CTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGT > 3:9914/1‑149 TAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGTTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTC > 5:174445/1‑149 GATGGTGTGAGTGCAGCGGTGACCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4902683‑4902847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcggctAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTACAGGCGAAGGATCTCTAGCGGCCGAAGCGCATCGGCCAGCCCACCACTTTCTTCGCCCGTGGCGTC < NC_002947/4902910‑4902763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |