New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4902847	28 (0.520)	4 (0.090)	4/226	NT	12.6%	intergenic (+33/+86)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
	?	NC_002947	= 4902910	31 (0.660)					intergenic (+96/+23)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit

GACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGGTCG  >  NC_002947/4902763‑4903057                                                                                                                                                    |                                                                                                                                                      gACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAACACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTa                                                                                                                                                      >  5:174445‑M2/1‑148 (MQ=255)  aCGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTag                                                                                                                                                     >  3:9914‑M2/1‑147 (MQ=255)   cGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagc                                                                                                                                                    >  4:61029‑M2/1‑146 (MQ=255)       aCGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgc                                                                                                                                                 <  7:16414‑M2/148‑7 (MQ=255)         gggCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaa                                                                                                                                              >  4:53103‑M2/1‑140 (MQ=255)         gggCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcg                                                                                                                                                <  3:53103‑M2/147‑8 (MQ=255)               agaaAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggcc                                                                                                                                        >  3:329831‑M2/1‑134 (MQ=255)                                   tggcgcttCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGTTGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTATGAGCGGGTTTagccg                                                                                                                                                  >  6:153410‑M2/3‑114 (MQ=255)                                       gcTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccg                                                                                                                                                  <  2:199577‑M2/115‑6 (MQ=255)                                       gcTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccg                                                                                                                                                  >  1:199577‑M2/1‑110 (MQ=255)                                                             cGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGGCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCcacc                                                                                          >  1:61460/1‑148 (MQ=255)                                                                        gCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTACCGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTg                                                                                >  1:331067/1‑148 (MQ=255)                                                                           tctTCGCGGCTGATGCCGCTCCTACCGGCCCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGt                                                                                 >  7:323468/1‑144 (MQ=255)                                                                           tctTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGt                                                                                 <  8:323468/144‑1 (MQ=255)                                                                                gcgGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAAc                                                                       >  1:150403/1‑149 (MQ=255)                                                                                gcgGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAAc                                                                       >  4:67693/1‑149 (MQ=255)                                                                                gcgGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAAc                                                                       >  8:212561/1‑149 (MQ=255)                                                                                  ggCAGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTAGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggc                                                                     <  1:89399‑M2/149‑83 (MQ=255)                                                                                         gCCGCTCCTACCGGACCAGCACCAGCGTGAATACGGTGGGGGCCGCGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCCCGGTTAACGCATCAGCCTGGCCAAACGGTGCGCAGTGCCACAGGCAAAGGTGACCCCTAGCGCC‑‑CCAGGc                                                            >  7:51686/1‑149 (MQ=255)                                                                                           cGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGccc                                                          >  7:187314/1‑149 (MQ=255)                                                                                           cGCTCCTACCGCACACGCACAAGCCTTAATCCCGGGGGGTCCTCGTCGGCGCGGCTTTAGCCGCTAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGccc                                                          <  8:105932/149‑1 (MQ=255)                                                                                            gCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCa                                                                                                             >  1:161391/1‑99 (MQ=255)                                                                                            gCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCa                                                                                                             <  2:161391/99‑1 (MQ=255)                                                                                              tCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcgtcgcataggtg                                                         <  3:186319‑M2/149‑95 (MQ=255)                                                                                               ccTACCGGACCACCAAAAGCCTCAATCCCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAgg                                                      <  5:338896/149‑1 (MQ=255)                                                                                                cTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAg                                                       <  3:67693/147‑1 (MQ=255)                                                                                                 tACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGc                                                                                              <  8:277967/109‑1 (MQ=255)                                                                                                 tACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGc                                                                                              >  7:277967/1‑109 (MQ=255)                                                                                                   ccGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCa                                                  <  7:212561/149‑1 (MQ=255)                                                                                                      gACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGcc                                               >  2:65288/1‑149 (MQ=255)                                                                                                        ccAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcgtcgcataggtgcgcactttgg                                               >  4:186319‑M2/1‑45 (MQ=255)                                                                                                         cAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCca                                              >  1:16137/1‑147 (MQ=255)                                                                                                             acaAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGtt                                        >  5:295904/1‑149 (MQ=255)                                                                                                                aGCCTGAATCCCGGGGGGCCCGCGTAGGAGGGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCg                                     <  2:61460/149‑1 (MQ=255)                                                                                                                 gCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAg                                                       <  4:59878/130‑1 (MQ=255)                                                                                                                          ccGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTc                           >  6:233591/1‑149 (MQ=255)                                                                                                                               gggTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCAGTAATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCa                        >  1:115130/1‑149 (MQ=255)                                                                                                                                     tCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCAc                       <  4:42014/142‑1 (MQ=255)                                                                                                                                     tCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCAc                       >  3:42014/1‑142 (MQ=255)                                                                                                                                     tCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGAt                >  5:98240/1‑149 (MQ=255)                                                                                                                                      cGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCAc                       >  4:231483/1‑141 (MQ=255)                                                                                                                                      cGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCAc                       <  3:231483/141‑1 (MQ=255)                                                                                                                                        tAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCa                        >  4:47545/1‑138 (MQ=255)                                                                                                                                             gCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCCGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCAccc        >  4:27178/1‑149 (MQ=255)                                                                                                                                              cGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcgtcgcataggtgcgcactttggacgtgctcaaacccatgcgcaccagcgattcggcaatg         >  2:89399‑M2/1‑7 (MQ=255)                                                                                                                                                    tAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCcggtcg  <  2:16137/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC‑‑CCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGGTCG  >  NC_002947/4902763‑4903057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.