New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5000620 =	57 (1.050)	3 (0.060)	3/242	NT	6.0%	intergenic (+90/‑1596)	PP_4407/PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
	?	NC_002947	5000661 =	41 (0.820)					intergenic (+131/‑1555)	PP_4407/PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase

AGTCGCTTGAGATGGCAGCTTCTGCAGGAGTCCAGACTCCTGCGGAAAACAACTCTACGAAGAAGTACTACTCTACGGAAAATCAGATGCATACCGCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5000773‑5000620 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgcctgATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTT  >  NC_002947/5000661‑5000807                                                                                                                                                                                                                                                                                                               AGTCGCTTGAGATGGCAGCTTCTGCAGGAGTCCAGACTCCTGCGGAAAACAACTCTACGAAGAAGTACTACTCTACGGAAAATCAGATGCATACCGCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCT                                                                                                                                                          <  6:227903/149‑1   TCGCTTGAGATGTCATCTTCTGCATGAGTCCAGACTCCTGCGGAAAACAACTCTACGAAGAAGTACTACTCTACGGAAAATCAGATGCATACCGCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCTGC                                                                                                                                                        <  8:290219/149‑1      CTTGAGATGGCAGCTTCTGCAGGAGTCCAGACTCCTGCGGAAAACAACTCTACGAAGAAGTACTACTCTACGGAAAATCAGATGCATACCGCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCTGCCTG                                                                                                                                                     <  1:310559/149‑1                               TCCAGACTCCTGCGGAAAACAACTCTACGAAGAAGTACTACTCTACGGAAAATCAGATGCATACCGCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCT                                                                                                                                                          >  5:342747/1‑119                               TCCAGACTCCTGCGGAAAACAACTCTACGAAGAAGTACTACTCTACGGAAAATCAGATGCATACCGCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCT                                                                                                                                                          <  6:342747/119‑1                                                                                                GCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTG                                                            >  4:226015/1‑148                                                                                                                  CAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAG                                         >  3:134990/1‑149                                                                                                                   AGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGC                                        >  6:238531/1‑149                                                                                                                                                    CTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCC         <  1:297285/147‑1                                                                                                                                                    CTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGT                                <  3:291856/124‑1                                                                                                                                                    CTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGT                                >  4:291856/1‑124                                                                                                                                                      GCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCAT      >  4:208587/1‑148                                                                                                                                                         TGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTT  >  3:142596/1‑149                                                                                                                                                          GATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACT                                    >  3:309666/1‑114                                                                                                                                                          GATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACT                                    <  4:309666/114‑1                                                                                                                                                                                                                                                                                                               AGTCGCTTGAGATGGCAGCTTCTGCAGGAGTCCAGACTCCTGCGGAAAACAACTCTACGAAGAAGTACTACTCTACGGAAAATCAGATGCATACCGCACCACGGCACCTTGATCAGGCAGGAGGCACCCCAGATAAGGGTTCAATTCCTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5000773‑5000620 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgcctgATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAGCGACTGCGTGCTCTGGCTGTGTTAACAGCTCCCATCCTT  >  NC_002947/5000661‑5000807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.