New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5000620 =57 (1.050)3 (0.060) 3/242 NT 6.0% intergenic (+90/‑1596) PP_4407/PP_4409 gamma‑aminobutyrate transporter/site‑specific recombinase
?NC_002947 5000661 = 41 (0.820)intergenic (+131/‑1555) PP_4407/PP_4409 gamma‑aminobutyrate transporter/site‑specific recombinase

CCTGATGCGCCAGCGGCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAG  >  NC_002947/5000473‑5000768
                                                                                                                                                   |                                                                                                                                                     
aaggatgggagctgttaacacagccagagcacgcagtcgcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatca                                                                                                                                                      >  3:142596‑M1/148‑149 (MQ=255)
    atgggagctgttaacacagccagagcacgcagtcgcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatcaggc                                                                                                                                                   >  4:208587‑M1/144‑148 (MQ=255)
    aTGCGCCAGCGGCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCcaggca                                                                                                                                                  <  8:315096/149‑1 (MQ=255)
     tGCGCCAGCGGCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCcaggcag                                                                                                                                                 <  3:160884/149‑1 (MQ=255)
       ggagctgttaacacagccagagcacgcagtcgcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatcaggcag                                                                                                                                                 <  1:297285‑M1/7‑1 (MQ=255)
         ccAGCGGCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAAt                                                                                                                                             >  6:42666/1‑149 (MQ=255)
             cGGCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGaa                                                                                                                                         <  7:290402/149‑1 (MQ=255)
               tcTGGCGTCAAGAGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTTCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAAcc                                                                                                                                       <  8:154470/148‑1 (MQ=255)
               gCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAccc                                                                                                                                       <  7:173076/149‑1 (MQ=255)
               gCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAAcc                                                                                                                                       <  5:42666/149‑1 (MQ=255)
                         aGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTggg                                                                                                                             <  6:30648/149‑1 (MQ=255)
                         aGCGCGGTGTTAGCCCACGAAAGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTggg                                                                                                                             <  6:58056/149‑1 (MQ=255)
                          gcgcGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTgggg                                                                                                                            <  6:141295/149‑1 (MQ=255)
                              acgcagtcgcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatcaggcag                                                                                                                                                 <  3:291856‑M1/7‑1 (MQ=255)
                              acgcagtcgcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatcaggcag                                                                                                                                                 >  4:291856‑M1/118‑124 (MQ=255)
                                  ttAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGcc                                                                                                                        <  5:212018/145‑1 (MQ=255)
                                  ttAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGcc                                                                                                                        >  6:212018/1‑145 (MQ=255)
                                  agtcgcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatc                                                                                                                                                       <  4:309666‑M1/1‑1 (MQ=255)
                                  agtcgcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatc                                                                                                                                                       >  3:309666‑M1/114‑114 (MQ=255)
                                     gCCCACGAACGTGATGCATGACAGCGCTGGCTACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTcctgcc                                                                                                                 >  1:163540/1‑149 (MQ=255)
                                     gCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTcctgcc                                                                                                                 >  6:163323/1‑149 (MQ=255)
                                      gcttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTcctgcct                                                                                                                >  6:238531‑M1/110‑149 (MQ=255)
                                      cccACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTcctgcct                                                                                                                >  1:132794/1‑149 (MQ=255)
                                       cttgagatggcagcttctgcaggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTcctgcctg                                                                                                               >  3:134990‑M1/109‑149 (MQ=255)
                                        cACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGa                                                                                                              >  3:80715/1‑149 (MQ=255)
                                         aCGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGAt                                                                                                             <  4:80715/149‑1 (MQ=255)
                                           gAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATc                                                                                                            >  4:18547/1‑148 (MQ=255)
                                           gAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATc                                                                                                            >  8:238566/1‑148 (MQ=255)
                                            aaCGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCaa                                                                                                          <  3:18547/149‑1 (MQ=255)
                                             aCGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAg                                                                                                         <  6:163423/149‑1 (MQ=255)
                                                  aTGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGcc                                                                                                    >  3:274897/1‑149 (MQ=255)
                                                     cATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCgtg                                                                                                 <  7:238566/149‑1 (MQ=255)
                                                      aTGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCgtgg                                                                                                >  5:67793/1‑149 (MQ=255)
                                                          caggagtccagactcctgcggaaaacaactctacgaagaagtactactctacggaaaatcagatgcataccgcaccacggcaccttgatCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGc                                                                                             >  4:226015‑M1/90‑148 (MQ=255)
                                                           aGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCgg                                                                                           <  6:67793/149‑1 (MQ=255)
                                                            gcgcTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGt                                                                                          <  5:163323/149‑1 (MQ=255)
                                                             cgcTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGt                                                                                                                           <  5:256778/115‑1 (MQ=255)
                                                             cgcTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGt                                                                                                                           >  6:256778/1‑115 (MQ=255)
                                                                   ccACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATc                                                                                   >  8:256013/1‑149 (MQ=255)
                                                                    cACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCt                                                                                  <  7:188686/149‑1 (MQ=255)
                                                                      cgcgCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGa                                                                                <  6:215143/149‑1 (MQ=255)
                                                                      cgcgCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGa                                                                                <  4:274897/149‑1 (MQ=255)
                                                                              tGCTGTCAACAGCAGCATGGCGGCAACGAATACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGACTCCTGCCTGATCAAGGTGCCTTGGTGCGGTATGCATCTGATTTTCCg                                                                         >  5:202836/1‑148 (MQ=255)
                                                                               gCTGTCAACAGCAGCATGGCGGCAACGATGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCg                                                                         >  1:193886/1‑147 (MQ=255)
                                                                                cTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCg                                                                         >  8:118303/1‑146 (MQ=255)
                                                                                cTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTa                                                                       <  7:118303/148‑1 (MQ=255)
                                                                                 tGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTaga                                                                     <  2:163540/149‑1 (MQ=255)
                                                                                  gTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTcctgcct                                                                                                                >  7:264238/1‑105 (MQ=255)
                                                                                  gTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTcctgcct                                                                                                                <  8:264238/105‑1 (MQ=255)
                                                                                       cagcagCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCcag                                                                                                                                                     >  2:191050/1‑63 (MQ=255)
                                                                                       cagcagCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCcag                                                                                                                                                     <  1:191050/63‑1 (MQ=255)
                                                                                            gcaTGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTActtct                                                          <  7:256013/149‑1 (MQ=255)
                                                                                              aTGGCGGCATCGAAGACGCCGGAGACAAGATGGGTATGTCGAGAATGGCGTCCCAGGCAGGAATTGAAGCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACttcttc                                                        <  6:202836/149‑1 (MQ=255)
                                                                                              aTGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACttcttc                                                        <  6:152389/149‑1 (MQ=255)
                                                                                                  cggcAACGAAGACGACGGAGACAAGATGGTAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTag                                                    <  2:38441/149‑1 (MQ=255)
                                                                                                   ggcAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTa                                                     >  4:258456/1‑147 (MQ=255)
                                                                                                         gAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTc                                                                           <  8:161887/119‑1 (MQ=255)
                                                                                                         gAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTc                                                                           >  7:161887/1‑119 (MQ=255)
                                                                                                              cgacgGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCg                                        <  7:289458/149‑1 (MQ=255)
                                                                                                                     gaCAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTAct                                                             <  1:12624/121‑1 (MQ=255)
                                                                                                                     gaCAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTAct                                                             >  2:12624/1‑121 (MQ=255)
                                                                                                                        aaGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTg                             >  7:222398/1‑149 (MQ=255)
                                                                                                                          gATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGa                           >  2:3085/1‑149 (MQ=255)
                                                                                                                           aTGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGAc                          >  3:295082/1‑149 (MQ=255)
                                                                                                                                aaTGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTg                             <  1:249182/141‑1 (MQ=255)
                                                                                                                                aaTGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTg                             >  2:249182/1‑141 (MQ=255)
                                                                                                                                aaTGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTg                     <  2:132794/149‑1 (MQ=255)
                                                                                                                                             gCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGTTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCa         <  2:193886/148‑1 (MQ=255)
                                                                                                                                             gCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGCAGTCTGGACTCCTGCAGAAGCTGCCa         <  1:3085/149‑1 (MQ=255)
                                                                                                                                                   CAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAg  <  1:310559‑M1/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
CCTGATGCGCCAGCGGCTGGCGTCAAGCGCGGTGTTAGCCCACGAACGTGATGCATGACAGCGCTGGCCACGCGCAGGTGCTGTCAACAGCAGCATGGCGGCAACGAAGACGACGGAGACAAGATGGGAATGACGAGAATGGCGTCCCAGGCAGGAATTGAACCCTTATCTGGGGTGCCTCCTGCCTGATCAAGGTGCCGTGGTGCGGTATGCATCTGATTTTCCGTAGAGTAGTACTTCTTCGTAGAGTTGTTTTCCGCAGGAGTCTGGACTCCTGCAGAAGCTGCCATCTCAAG  >  NC_002947/5000473‑5000768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.