New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 516945953 (0.980)5 (0.100) 5/240 NT 9.5% coding (1077/1365 nt) PP_4547 glutamine synthetase
?NC_002947 = 5169504 46 (0.920)coding (1122/1365 nt) PP_4547 glutamine synthetase

CCCAACGCCAACTCCTTCCGCCGCTTCCAGGCCAACAGCTATGCGCCCCTGGCGCCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5169307‑5169459
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggatgcc‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTGGCATCCGCGCCACAGATGCGGTGCTCCACATGGCGGCTGTTGGCAGGGCCTCCTGGCACACGCAGGCTCACGGTGCGGTTGTCCACGCCCCAGGTTGGCGC  <  NC_002947/5169504‑5169358
                                                                                                                                                                                                                                                                                                              
CCCAACGCCAACTCCTTCCGCCGCTTCCAGGCCAACAGCTATGCGCCCCTGGCGCCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGA                                                                                                                                                           >  5:114960/1‑149
                                                    CGCCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTG                                                                                                       <  8:19051/149‑1
                                                                    GGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCC‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTGGCATCCGCG                                                                                              >  5:24625/1‑140
                                                                    GGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCC‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTGGCATCCGCG                                                                                              <  6:24625/140‑1
                                                                                                       GCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCC‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTT                                                                                                        <  3:233821/95‑1
                                                                                                       GCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCC‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTT                                                                                                        >  4:233821/1‑95
                                                                                                                                                  GGATGCC‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTGGCATCCGCGCCACAGATGCGGTGCTCCACATGGCGGCTGTTGGCAGGGCCTCCTGGCACACGCAGGCTCACGGTGCGGTTGTCCACGCCCCAGGTT       >  4:200357/1‑149
                                                                                                                                                  GGATGCC‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGGAAGGGTTGGCATCCGCGCCACAGATGCGGTGCTCCACATGGCGGCTGTTGGCAGGGCCTCCTGGCACCCGCAGGCTCACGGTGCGGTTGTCCACGCCCCAGGTT       >  8:316273/1‑149
                                                                                                                                                       CC‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTGGCATCCGCGCCACAGATGCGGTGCTCCACATGGCGGCTGTTGGCAGGGCCTCCTGGCACACGCAGGCTCACGGTGCGGTTGTCCACGCCCCAGGTTGGCGC  >  7:122734/1‑149
                                                                                                                                                        C‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTGGCATCCGCGCCACAGATGCGGTGCTCCACATGGCGGCTGTTGGCAGGGCCTCCTGGCACACGCAGGCTCACGGTGCGGTTGTCCACGCCCCAGGTTGGCGC  >  7:146661/1‑148
                                                                                                                                                                                                                                                                                                              
CCCAACGCCAACTCCTTCCGCCGCTTCCAGGCCAACAGCTATGCGCCCCTGGCGCCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5169307‑5169459
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggatgcc‑‑CCAGTGGCTGGCAGCAAGGATCGCCGCTGCTGCCAGGTAAGGGTTGGCATCCGCGCCACAGATGCGGTGCTCCACATGGCGGCTGTTGGCAGGGCCTCCTGGCACACGCAGGCTCACGGTGCGGTTGTCCACGCCCCAGGTTGGCGC  <  NC_002947/5169504‑5169358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.