New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5169459	53 (0.980)	5 (0.100)	5/240	NT	9.5%	coding (1077/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	= 5169504	46 (0.920)					coding (1122/1365 nt)	PP_4547	glutamine synthetase

GCGCCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTGAAGCATTGGGCGAAGAC  >  NC_002947/5169358‑5169648                                                                                                                                                   |                                                                                                                                                 gcgcCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGgg                                                                                                                                                >  7:122734‑M2/1‑147 (MQ=255) gcgcCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGg                                                                                                                                                 >  7:146661‑M2/1‑147 (MQ=255)      aaCCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGggcatcc                                                                                                                                           >  4:200357‑M2/1‑142 (MQ=255)      aaCCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGGGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTCCCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGggcatcc                                                                                                                                           >  8:316273‑M2/1‑142 (MQ=255)                gTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCt                                                                                                                                 <  4:132598/149‑1 (MQ=255)                        ccGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAg                                                                                                                         >  3:38006/1‑149 (MQ=255)                         cGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAgg                                                                                                                        <  6:282904/149‑1 (MQ=255)                              cGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGgcgcgc                                                                                                                   >  6:261853/1‑149 (MQ=255)                                    ccTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTg                                                                                                             <  1:177506/149‑1 (MQ=255)                                        cGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGaa                                                                                                           <  5:60518/147‑1 (MQ=255)                                        cGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAgg                                                                                                         >  6:331952/1‑149 (MQ=255)                                        cGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAg                                                                                                          <  3:265730/148‑1 (MQ=255)                                        cGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAg                                                                                                          <  8:7377/148‑1 (MQ=255)                                          tgtgCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGc                                                                                                        >  4:46899/1‑148 (MQ=255)                                              ccAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACgg                                                                                                   <  5:331952/149‑1 (MQ=255)                                                  gaggCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATTCCAACCCATAACTGGCAGCAGCGGCGCTCCTTGCTGCCAGCCCCAGGGGCATCCGCGAACAGCTTGCCCCAGGCGCGCCCGTTGAAAGCACCGGCTAt                                                                                               >  6:37947/1‑149 (MQ=255)                                                  gaggCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCCGGCGCGCCCGTTGAAGGCAACGGCTAt                                                                                               >  4:274584/1‑149 (MQ=255)                                                  gaggCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTAt                                                                                               <  2:170851/149‑1 (MQ=255)                                                  gaggCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTAt                                                                                               <  3:274584/149‑1 (MQ=255)                                                     gCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGccc                                                                                                                 >  8:220888/1‑128 (MQ=255)                                                       ccTGCCAACAGCCGCCATGTGGAGCACCGCATCGGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGcc                                                                                            >  3:158940/1‑147 (MQ=255)                                                        cTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCGGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAg                                                                                         <  5:309854/149‑1 (MQ=255)                                                             aaCAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCAc                                                                                    <  5:261853/149‑1 (MQ=255)                                                               cAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCg                                                                                  <  1:338619/149‑1 (MQ=255)                                                                aGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGCCCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCg                                                                                  >  1:13207/1‑148 (MQ=255)                                                                aGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCg                                                                                  >  6:256268/1‑148 (MQ=255)                                                                  ccgccATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAac                                                                               <  5:256268/149‑1 (MQ=255)                                                                   cgccATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAaca                                                                              >  3:118420/1‑149 (MQ=255)                                                                        tgtgGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGc                                                                         >  1:150214/1‑149 (MQ=255)                                                                            gAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCac                                                                     >  7:99548/1‑149 (MQ=255)                                                                                   gCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACTGAACACCTGCCCACTGACTgg                                                              <  4:38006/149‑1 (MQ=255)                                                                                     aTCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCt                                                            <  8:99548/149‑1 (MQ=255)                                                                                        tgtgGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGAc                                                         >  1:197729/1‑149 (MQ=255)                                                                                        tgtgGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGAc                                                         >  4:209158/1‑149 (MQ=255)                                                                                          tgGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGTTCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACGCAGGCGCGCCCGTTGAAGGCAACGGCTATGCGCAGGCCACCGAACACCTGCCCACTGACTGGCTGAcc                                                        <  5:293501/148‑1 (MQ=255)                                                                                          tgGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGAcc                                                        <  5:37947/148‑1 (MQ=255)                                                                                          tgGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCg                                                       >  2:130531/1‑149 (MQ=255)                                                                                            gcgcGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCa                                                     >  5:23999/1‑149 (MQ=255)                                                                                             cgcgGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGggcatccgcgccacagatgcggtgctccacatggcggctgttggcagggcctcctggcacacgcaggctcacggtgcggttgtcc                                                             <  6:24625‑M2/140‑86 (MQ=255)                                                                                             cgcgGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGggcatccgcgccacagatgcggtgctccacatggcggctgttggcagggcctcctggcacacgcaggctcacggtgcggttgtcc                                                             >  5:24625‑M2/1‑55 (MQ=255)                                                                                             cgcgGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCAc                                                    <  6:23999/149‑1 (MQ=255)                                                                                                    gCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGACCCCCTGCCCACTGACTGGCTGCCCGCACTCGACGc                                             >  8:221940/1‑149 (MQ=255)                                                                                                    gCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGc                                             >  8:226337/1‑149 (MQ=255)                                                                                                      cAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGGTAAGGGttggcatccgcgccacagatgcggtgctccacatggcggctgttggcagggcctcctggcacacgcaggctcacggtgcggttgtccacgccccaggttggcg                                           <  8:19051‑M2/149‑104 (MQ=255)                                                                                                       aaCCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGggcatccgcgccacagatgcggtgctccacatggcggctgttggcagggc                                                                                                >  4:233821‑M2/1‑45 (MQ=255)                                                                                                       aaCCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGggcatccgcgccacagatgcggtgctccacatggcggctgttggcagggc                                                                                                <  3:233821‑M2/95‑51 (MQ=255)                                                                                                       aaCCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCt                                          >  5:37536/1‑149 (MQ=255)                                                                                                              aCCTGGCAGCAGCGGCGATCCTTGCTTCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAAc                                     <  6:37536/147‑1 (MQ=255)                                                                                                                   gcagcaGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGa                              >  7:153237/1‑149 (MQ=255)                                                                                                                            gcgATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCg                     >  8:15835/1‑149 (MQ=255)                                                                                                                               aTCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTg                   >  5:118426/1‑148 (MQ=255)                                                                                                                                 ccTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTGAAg                >  7:30973/1‑149 (MQ=255)                                                                                                                                  cTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTGAAg                >  2:94727/1‑148 (MQ=255)                                                                                                                                         ccagccaCTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTGAAGCATTGGGc        <  2:197729/149‑1 (MQ=255)                                                                                                                                         ccagccaCTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCACGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTGAAGCATTGGGc        >  1:312626/1‑149 (MQ=255)                                                                                                                                               aCTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTGAAGCATTGGGCGAAGAc  <  7:15835/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GCGCCAACCTGGGGCGTGGACAACCGCACCGTGAGCCTGCGTGTGCCAGGAGGCCCTGCCAACAGCCGCCATGTGGAGCACCGCATCTGTGGCGCGGATGCCAACCCTTACCTGGCAGCAGCGGCGATCCTTGCTGCCAGCCACTGGGGCATCCGCGAACAGCTTGACCCAGGCGCGCCCGTTGAAGGCAACGGCTATGCCCAGGCCACCGAACACCTGCCCACTGACTGGCTGACCGCACTCGACGCCCTGCAACATTCCGATTGGGCCCGTGAAGCATTGGGCGAAGAC  >  NC_002947/5169358‑5169648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.