| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5538192 | 54 (1.000) | 4 (0.080) | 3/248 | NT | 7.0% | coding (270/588 nt) | PP_4871 | lysine decarboxylase family protein |
| ? | NC_002947 | = 5538223 | 54 (1.050) | coding (301/588 nt) | PP_4871 | lysine decarboxylase family protein | |||||
TATGGCGGTGGCGCGGTCGGCTTGATGGGTGTGGTGGCCGACGCGGCCATGGCGGCCGGTGGCGAAGTGGTCGGGATCATCCCGCAGAGCCTGCTGGACGCTGAAGTCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTGGATGGCATGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5538040‑5538192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcatCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCATGCCATCCACCACTTCCAGGCGGGTCAGGCCCTTGTGGCCGACTTCAGCGTCCA < NC_002947/5538223‑5538134 TATGGCGGTGGCGCGGTCGGCTTGATGGGTGTGGTGGCCGACGCGGCCATGGCGGCCGGTGGCGAAGTGGTCGGGATCATCCCGCAGAGCCTGCTGGACGCTGAAGTCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTGGATGGCA < 5:40662/148‑1 CGCGGCCAGGGCGGCCGGTGGCGAAGTGGTCGGGATCATCCCGCAGAGCCTGCTGGACGCTGAAGTCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTGGATGGCATGCATCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCAT < 8:224272/149‑1 GCGGCCATGGCGGCCGGTGGCGAAGTGGTCGGGATCATCCCGCAGAGCCTGCTGGACGCTGAAGTCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTGGATGGCATGCATCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCATG < 2:318472/149‑1 GGCCATGGCGGCCGGTGGCGAAGTGGTCGGGATCATCCCGCAGAGCCTGCTGGACGCTGAAGTCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTGGATGGCATGCATCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCATG < 7:243019/147‑1 GGCCATGGCGGCCGGTGGCGAAGTGGTCGGGATCATCCCGCAGAGCCTGCTGGACGCTGAAGTCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTGGATGGCATGCATCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCATG > 8:243019/1‑147 ATCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCATGCCATCCACCACTTCCAGGCGGGTCAGGCCCTTGTGGCCGACTTCAGCGTCCA < 7:172960/92‑1 ATCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCATGCCATCCACCACTTCCAGGCGGGTCAGGCCCTTGTGGCCGACTTCAGCGTCCA > 8:172960/1‑92 TATGGCGGTGGCGCGGTCGGCTTGATGGGTGTGGTGGCCGACGCGGCCATGGCGGCCGGTGGCGAAGTGGTCGGGATCATCCCGCAGAGCCTGCTGGACGCTGAAGTCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTGGATGGCATGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5538040‑5538192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcatCGCTCAGCTCGGCCATGCGGGCCTTGCGCGCATGCATGCCATCCACCACTTCCAGGCGGGTCAGGCCCTTGTGGCCGACTTCAGCGTCCA < NC_002947/5538223‑5538134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |