New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5543748 =	73 (1.350)	6 (0.120)	6/244	NT	9.6%	coding (395/864 nt)	PP_4875	membrane protein
	?	NC_002947	5543800 =	45 (0.890)					coding (343/864 nt)	PP_4875	membrane protein

CGCCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGCAAACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5543900‑5543748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaaggTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGAT  >  NC_002947/5543800‑5543943                                                                                                                                                                                                                                                                                                           CGCCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGCAAACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATC                                                                                                                                                       >  7:101123/1‑148  GCCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGCAAACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCG                                                                                                                                                      >  6:174309/1‑148   CCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGCAAACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCG                                                                                                                                                      >  5:278881/1‑147     ATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGCAAACCTTCGATGTGCTGCCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGG                                                                                                                                                  <  5:98910/149‑1                                                                                                 GCAAACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACG                                                       >  1:276524/1‑148                                                                                                    AACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGGTTTGCGCACGCGCCAGATCAAGCACGAGGCTGAAAGCCCCGGCGAACACTGCACTGGCGAGCACCACACGGCTCCAGGGGTGCTCGGCACGC                                                      >  8:117973/1‑146                                                                                                     ACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACA                                                  >  7:218326/1‑149                                                                                                           GATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGG                                            <  2:276524/149‑1                                                                                                              GTGCGGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCC                                          <  7:117973/148‑1                                                                                                                                  CGAAGCCATGCCGAAAATCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATC                     <  8:218326/149‑1                                                                                                                                                  ATCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGG     <  6:98910/149‑1                                                                                                                                                  ATCGAAGGTTTACGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGG     >  1:260803/1‑149                                                                                                                                                   TCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCAC                   >  1:168105/1‑134                                                                                                                                                   TCGAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCAC                   <  2:168105/134‑1                                                                                                                                                     GAAGGTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGAT  >  8:300175/1‑149                                                                                                                                                                                                                                                                                                           CGCCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGCAAACCTTCGATGTGCTGGCCAAGGCGTTTGCCGAAGCCATGCCGAAAATCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5543900‑5543748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaaggTTTGCGCCAGCGCCAGATCAAGCACGAGGCTGAAAGCCACGGCGAACACGGCACTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGAT  >  NC_002947/5543800‑5543943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.