New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5852239 =	70 (1.290)	4 (0.080)	4/250	NT	5.9%	coding (55/1089 nt)	PP_5129	hypothetical protein
	?	NC_002947	5852274 =	60 (1.150)					coding (20/1089 nt)	PP_5129	hypothetical protein

AAGGTAACCTGCTGGAGGCCAAGGCCGAAGCGCTGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5852277‑5852239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttaCCTTGCATAAAGTGGATCATTAGAAGTACCACCCAGGACGAGCATACACAGGGAGATTCAATCGACGTTGCTGAACCTCCTTGTCGACACGCCCCTTCAAAGCTTCGTTGTAGCAGACAATTCCCAGAAGGGCAGCAACTGGGACA  >  NC_002947/5852274‑5852419                                                                                                                                                                                           AAGGTAACCTGCTGGAGGCCAAGGCCGAAGCGCTGGTTACCTTGCATAAAGTGGATCATTAGAAGTACCACCCAGGACGAGCATACACAGGGAGATTCAATCGACGTTGCTGAACCTCCTTGTCGACACGCCCCTTCAAAGCTTCGTTG                                      >  8:292628/1‑149   GGTAACCTGCTGGAGGCCAAGGCCGAAGCGCTGGTTACCTTGCAT‑AAGTGGATCATTAGAAGTACCACCCAGGACGAGCATACACAGGGAGATTCAATCGACGTTGC                                                                             <  1:296209/107‑1   GGTAACCTGCTGGAGGCCAAGGCCGAAGCGCTGGTTACCTTGCAT‑AAGTGGATCATTAGAAGTACCACCCAGGACGAGCATACACAGGGAGATTCAATCGACGTTGC                                                                             >  2:296209/1‑107                         CCGAAGCGCTGGTTACCTTGCATAAAGTGGATCATTAGAAGTACCACCCAGGACGAGCATACACAGGGAGATTCAATCGACGTTGCTGAACCTCCTTGTCGACACGCCCCTTCAAAGCTTCGTTGTAGCAGATAATTCCCAGAAGGGCA              <  7:292628/149‑1                                     TTACCTTGCATAAAGTGGATCATTAGAAGTACCACCCAGGACGAGCATACACAGGGAGATTCAATCGACGTTGCTGAACCTCCTTGTCGACACGCCCCTTCAAAGCTTCGTTGTAGCAGACAATTCCCAGAAGGGCAGCAACTGGGACA  <  6:266319/149‑1                                                                                                                                                                                           AAGGTAACCTGCTGGAGGCCAAGGCCGAAGCGCTGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5852277‑5852239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttaCCTTGCATAAAGTGGATCATTAGAAGTACCACCCAGGACGAGCATACACAGGGAGATTCAATCGACGTTGCTGAACCTCCTTGTCGACACGCCCCTTCAAAGCTTCGTTGTAGCAGACAATTCCCAGAAGGGCAGCAACTGGGACA  >  NC_002947/5852274‑5852419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.