| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5978785 | 69 (1.280) | 5 (0.090) | 4/254 | NT | 6.4% | coding (332/993 nt) | PP_5241 | LuxR family transcriptional regulator |
| ? | NC_002947 | = 5978841 | 78 (1.480) | coding (276/993 nt) | PP_5241 | LuxR family transcriptional regulator | |||||
AACAGCGCCTCGGCACTGGCAAACAAGTGGTGCGGGATGTCCTGCGAGCGCAACAGCCGGCCCAACGCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5978635‑5978785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCCTGGCCGAGACTGTCGAGCCGCTCGATGAGCGCGTGAATGTGCCGGTGTTGGTGGTGGATGACGACTCGTCGGTGCGCACCGCGTTGGGC < NC_002947/5978841‑5978694 AACAGCGCCTCGGCACTGGCAAACAAGTGGTGCGGGATGTCCTGCGAGCGCAACAGCCGGCCCAACGCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAG > 4:270443/1‑149AACAGCGCCTCGGCACTGGCAAACAAGTGGTGCGGGATGTCCTGCGAGCGCAACAGCCGGCCCAACGCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAG > 8:161356/1‑149 CTCGGCACTGGCAAACAAGTGGTGCGGGATGTCCTGCGAGCGCAACAGCCGGCCCAACGCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCTGGCCGCG > 1:55634/1‑147 AACAGCCGGCCCAACGCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTG > 8:173498/1‑149 CCAACGCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCC < 7:173498/149‑1 GCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCTGGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCCTGGCC < 2:55634/149‑1 CACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAGGCCGCGCAGATCAACCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCC > 7:247283/1‑115 CACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAGGCCGCGCAGATCAACCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCC < 8:247283/115‑1 GGCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCCTGGCCGAGACTGTCGAGCCGCTCGATGAGCGCGTGAATGTGCCGGTGTTGGTGGTGGATGACGACTCGTCGGTGCGCACCGCGTTGG > 7:143962/1‑149 GCCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCCTGGCCGAGACTGTCGAGCCGCTCGATGAGCGCGTGAATGTGCCGGTGTTGGTGGTGGATGACGACTCGTCGGTGCGCACCGCGTTGG < 7:165990/148‑1 CCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCCTGGCCGAGACTGTCGAGCCGCTCGATGAGCGCGTGAATGTGCCGGTGTTGGTGGTGGATGACGACTCGTCGGTGCGCACCGCGTTGGGC < 6:278614/149‑1 AACAGCGCCTCGGCACTGGCAAACAAGTGGTGCGGGATGTCCTGCGAGCGCAACAGCCGGCCCAACGCGGTGCGCACCGACGAGTCGTCATCCACCACCAACACCGGCACATTCACGCGCTCATCGAGCGGCTCGACAGTCTCGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5978635‑5978785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCGCGCAGATCAGCCTCGAGGAGCCTGGTGAGGCATTGGGCAGGTCGTTGCTGCGCAGCCTGGCCGAGACTGTCGAGCCGCTCGATGAGCGCGTGAATGTGCCGGTGTTGGTGGTGGATGACGACTCGTCGGTGCGCACCGCGTTGGGC < NC_002947/5978841‑5978694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |