| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6020434 | 40 (0.740) | 3 (0.060) | 3/250 | NT | 7.4% | coding (215/1305 nt) | dadA‑II | D‑amino acid:quinone oxidoreductase |
| ? | NC_002947 | = 6020469 | 37 (0.710) | coding (180/1305 nt) | dadA‑II | D‑amino acid:quinone oxidoreductase | |||||
GCAGCTCGTCGAGGCAGTCACGGCTGTACTCGGACAGGCGCACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6020282‑6020434‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCCCCCTGGCC‑ATCAAGCTCACGGGCGATGTCGACCAGTACCTGTGGATGGCACAGATGCTGCGCAACTGCACTGCCAGCCGCTACGCGGTGAACAAGGAGCGCATGGT < NC_002947/6020469‑6020323 GCAGCTCGTCGAGGCAGTCACGGCTGTACTCGGACAGGCGCACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGG < 3:122350/149‑1GCAGCTCGTCGAGGCAGTCACGGCTGTACTCGGACAGGCGCACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGG < 4:317032/149‑1 CTGTACTCGGACAGGCGCACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGG < 5:258514/126‑1 CTGTACTCGGACAGGCGCACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGG > 6:258514/1‑126 ACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCAC < 7:198037/149‑1 TGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCC < 5:229308/116‑1 TGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGGGCGTACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCC > 6:229308/1‑116 GCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGGGC < 5:12480/66‑1 GCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGGGC > 6:12480/1‑66 TACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCCCCCTGGCCGATCAAGCTCACGGGCGATGTCGACCAGTACCTGTGGATGGCACAGATGCTGCGCAACTGCACTGCCAGCCGCTACGCGGTGAACAAGGAGCGCATGGT > 1:85962/1‑149 GCAGCTCGTCGAGGCAGTCACGGCTGTACTCGGACAGGCGCACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATGGCCAGGGGGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6020282‑6020434‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtACCGCTCAAAGCCATCAAGTGGCTGCTGGAGCGTCACGCCCCCCTGGCC‑ATCAAGCTCACGGGCGATGTCGACCAGTACCTGTGGATGGCACAGATGCTGCGCAACTGCACTGCCAGCCGCTACGCGGTGAACAAGGAGCGCATGGT < NC_002947/6020469‑6020323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |