New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6020434	40 (0.740)	3 (0.060)	3/250	NT	7.4%	coding (215/1305 nt)	dadA‑II	D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6020469	37 (0.710)					coding (180/1305 nt)	dadA‑II	D‑amino acid:quinone oxidoreductase

ACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGGTAGTAGGCACTGGCGGT  >  NC_002947/6020323‑6020612                                                                                                                                                    |                                                                                                                                                aCCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGATCGGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTa                                                                                                                                                >  1:85962‑M2/1‑148 (MQ=255)       cgcTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAg                                                                                                                                          <  2:70631/148‑1 (MQ=255)          tCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAgg                                                                                                                                         >  6:251164/1‑146 (MQ=255)          tCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAgg                                                                                                                                         <  5:251164/146‑1 (MQ=255)            cTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGgcgc                                                                                                                                      <  5:137031/147‑1 (MQ=255)            cTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAg                                                                                                                                    >  7:127601/1‑149 (MQ=255)               gTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGcc                                                                                                                                  >  2:42826/1‑148 (MQ=255)                    ccccgTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATTGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGc                                                                                                                            <  2:83166/146‑1 (MQ=255)                     cgcgTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGc                                                                                                                            >  8:102167/1‑148 (MQ=255)                                tGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCg                                                                                                                >  4:298915/1‑149 (MQ=255)                                   cagtgcagtTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGc                                                                                                             <  7:298372/149‑1 (MQ=255)                                   cagtgcagtTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGc                                                                                                             >  3:298867/1‑149 (MQ=255)                                     gtgcagtTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGc                                                                                                             >  8:203432/1‑147 (MQ=255)                                               gcagcaTCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAg                                                                                                                         >  8:7346/1‑125 (MQ=255)                                               gcagcaTCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAg                                                                                                                         <  7:7346/125‑1 (MQ=255)                                                    aTCTGTGCCATCCACAGGTACTGGTCGACATCGCACGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCC‑GGCCAGATCTCGcccggcta                                                                                            <  3:120983/148‑7 (MQ=255)                                                         tgCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATATCCGGGCGAGATCTGGCCGGCGTTg                                                                                           <  1:42826/145‑1 (MQ=255)                                                         tgCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTgg                                                                                          <  1:284925/146‑1 (MQ=255)                                                         tgCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTg                                                                                           <  8:18880/145‑1 (MQ=255)                                                                    ggTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTcc                                                                            <  3:320143/149‑1 (MQ=255)                                                                      tACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCAt                                                                          <  8:148228/149‑1 (MQ=255)                                                                        cTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGATATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATg                                                                         <  1:47472/148‑1 (MQ=255)                                                                           gTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGcc                                                                      <  7:203432/148‑1 (MQ=255)                                                                           gTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGc                                                                       <  1:294803/147‑1 (MQ=255)                                                                            tCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCAc                                                                    >  4:257454/1‑149 (MQ=255)                                                                            tCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCAc                                                                    >  6:231864/1‑149 (MQ=255)                                                                                cATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCGAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCAccgcc                                                                <  2:186889/149‑1 (MQ=255)                                                                                             cTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGa                                                   <  7:102167/149‑1 (MQ=255)                                                                                                     gCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGATGGTTTCCATGGACAACGACGGCTGGCGGTCTACCACCGt                                            >  8:168690/1‑149 (MQ=255)                                                                                                      ccAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGt                                            >  5:265364/1‑148 (MQ=255)                                                                                                          gggggCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGCCCACCGTGACtt                                       >  8:155304/1‑149 (MQ=255)                                                                                                            gggCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTacgcccccctggccatcaagctcacgggcgatgtcgaccagtacctgtggatggcacagatgctgcgcaactgca                                                                      >  6:229308‑M2/1‑41 (MQ=255)                                                                                                            gggCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTacgcccccctggccatcaagctcacgggcgatgtcgaccagtacctgtggatggcacagatgctgcgcaactgca                                                                      <  5:229308‑M2/116‑76 (MQ=255)                                                                                                                gTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTacgcccccctggccatcaagctcacgggcgatgtcgaccagtacctgtggatggcacagatgctgcgcaactgcactgccagccgctacgcggtgaacaaggagcgcatggt                                 <  7:198037‑M2/149‑113 (MQ=255)                                                                                                                   aCGCTCCAGCAGCCACTTGTTGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCtt                              <  4:154484/149‑1 (MQ=255)                                                                                                                   aCGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCtt                              <  4:298867/149‑1 (MQ=255)                                                                                                                          agcagcCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGc                       >  2:288650/1‑149 (MQ=255)                                                                                                                           gcagcCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGcc                      <  7:155304/149‑1 (MQ=255)                                                                                                                             agcCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAg                    <  5:231864/149‑1 (MQ=255)                                                                                                                                 aCTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGgtag                >  2:192307/1‑149 (MQ=255)                                                                                                                                      aTGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGGTAGTAgg            >  1:217716/1‑148 (MQ=255)                                                                                                                                               aGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTc                                      <  6:351498/113‑1 (MQ=255)                                                                                                                                               aGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTc                                      >  5:351498/1‑113 (MQ=255)                                                                                                                                               aGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGGTAGTAGGCACTGGCGGt  <  8:127601/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                ACCATGCGCTCCTTGTTCACCGCGTAGCGGCTGGCAGTGCAGTTGCGCAGCATCTGTGCCATCCACAGGTACTGGTCGACATCGCCCGTGAGCTTGAT‑GGCCAGGGGGGCGTGACGCTCCAGCAGCCACTTGATGGCTTTGAGCGGTACGCCAGGCGCAGCCCAGGGCGAGGCATAGCCGGGCGAGATCTGGCCGGCGTTGGCAAAGCTGGTTTCCATGGCCACCGCCGGCTGGCGGTCGACCACCGTGACTTCGAAACCTTGCCGGGCCAGGTAGTAGGCACTGGCGGT  >  NC_002947/6020323‑6020612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.