New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6024519	51 (0.940)	3 (0.060)	3/250	NT	5.4%	coding (942/1491 nt)	yjiR	transcriptional regulator
	?	NC_002947	= 6024547	56 (1.080)					coding (970/1491 nt)	yjiR	transcriptional regulator

AGATCACCCCCAGCTGCAACAACCCGCTGGGCTACATCATGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6024371‑6024519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcGGCCATCGTCGTCGAACGACTTCAGGGTGCGTGGGCGT  <  NC_002947/6024547‑6024510                                                                                                                                                                                             AGATCACCCCCAGCTGCAACAACCCGCTGGGCTACATCATGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACG                                         >  1:202667/1‑148                                   CATCATGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCGGCCATCGTCGTCGAACGACTTCAGGGTGCGTGG      <  5:346814/149‑1                                     TCATGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCGGCCATCGTCGTCGAACGACTTCAGGGTGCGTGGGC    <  6:254084/149‑1                                       agtCCCGAGGCACGCAAGCAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCCCGCCCACGCGGCCATCGTCGTCGAACGACTTCAGGGTGCGTGGGCGT  <  8:132109/146‑1                                                                                                                                                                                             AGATCACCCCCAGCTGCAACAACCCGCTGGGCTACATCATGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6024371‑6024519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcGGCCATCGTCGTCGAACGACTTCAGGGTGCGTGGGCGT  <  NC_002947/6024547‑6024510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.