| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6024519 | 51 (0.940) | 3 (0.060) | 3/250 | NT | 5.4% | coding (942/1491 nt) | yjiR | transcriptional regulator |
| ? | NC_002947 | = 6024547 | 56 (1.080) | coding (970/1491 nt) | yjiR | transcriptional regulator | |||||
TCATGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCGCCAGCCAGCCTCAGCTGG > NC_002947/6024407‑6024688 | tcatGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGtgctg < 8:236458/149‑1 (MQ=255) ccGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTg > 2:260384/1‑148 (MQ=255) ccGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGc < 3:214290/149‑1 (MQ=255) gCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAgttcgttc > 2:59313/1‑149 (MQ=255) cAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTtct > 2:56653/1‑149 (MQ=255) aagGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCaa < 2:310291/149‑1 (MQ=255) gCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAAc > 4:13011/1‑149 (MQ=255) ccTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGTCGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAAccc > 5:295688/1‑149 (MQ=255) ccTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCg < 1:180107/149‑1 (MQ=255) cTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTc < 1:34713/141‑1 (MQ=255) cTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTc > 2:34713/1‑141 (MQ=255) cTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCgg > 3:142978/1‑149 (MQ=255) cccAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTg > 7:140939/1‑149 (MQ=255) cAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCg > 5:131714/1‑149 (MQ=255) cAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCg < 6:131714/149‑1 (MQ=255) aCGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGa > 4:88921/1‑149 (MQ=255) tATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTAAACCTACCCACCCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCgg > 6:194223/1‑149 (MQ=255) gCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGgc < 1:56653/149‑1 (MQ=255) gATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGgcg‑c > 6:209188/1‑149 (MQ=255) tCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTgg < 7:275666/139‑1 (MQ=255) tCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCAACCTGAAGTCGTTCGACGACGATGGCCGCGTCCTGCTCTGCAGTTCGTTCTACAAAACCCTCGCCCCCGGCCTGCCGATCGCCTgggagaaagg > 8:275666/1‑140 (MQ=255) tGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCAGCCTGAAGTCGTTAGACGACGATGGCCGCGTGCGGCTCTGCAGTTGGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCggg > 7:129298/1‑149 (MQ=255) tgtACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGACGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGa < 1:48245/148‑1 (MQ=255) cTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGca > 7:91034/1‑149 (MQ=255) gCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCGCCCCGGGCGCTACCTGGAGCGCGTGCTGcaca < 1:210761/149‑1 (MQ=255) gCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGcac < 1:260384/147‑1 (MQ=255) cTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATg > 8:291487/1‑148 (MQ=255) cTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATg > 1:118124/1‑148 (MQ=255) acctacgCACGCCCACCCACCCTTTAGTCGTTCGACGACGATGTCCGCGTGGTGGTCTGCTGTTCGTGCTCCTATCGCCTCGCGCCCGGGCTGCGGATCCGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTTCACATGAAATa < 8:129298/149‑1 (MQ=255) acctaccCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATa > 1:232703/1‑149 (MQ=255) ctaccCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACAt < 2:252803/141‑1 (MQ=255) ctaccCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACAt > 1:252803/1‑141 (MQ=255) ctaccCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACa > 3:303544/1‑149 (MQ=255) accCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGTAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACa < 5:319839/147‑1 (MQ=255) accCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGTAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACa > 6:319839/1‑147 (MQ=255) cccacgcccacgCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCa < 3:56358/149‑1 (MQ=255) cccacgcccacgCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCa < 8:140939/149‑1 (MQ=255) cccacgcccacgCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCa < 1:59313/149‑1 (MQ=255) ccacgcccacgcACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAg > 6:54732/1‑149 (MQ=255) cacgcccacgcACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCACGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAg > 8:160262/1‑148 (MQ=255) acgcccacgcACCCTGAAGTCGTTCGACGACGATGGCCgcgtgggcgggggtaggtataggccaggtcgccgtacacatcgtcttccagaatcgccacgtcatagcgttgggcgaggctcagcagggcctgcttgcgtgcctcgggact < 8:132109‑M2/149‑112 (MQ=255) acgcccacgcACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCa > 1:193111/1‑149 (MQ=255) acgcccacgcACCCTGAAGTCGTTCGACGACGATGGCCGCGAGCTGCTCTGCAGTTCGTTCTACAAAACCCTCCCGCCCGGCCTGCGGATCCGCTGGGTGGCG‑CCCGGCCGCTACCTGGAGCGAGTGCTGCACAAGAAATACATCa > 7:95871/1‑146 (MQ=255) gcccacgcACCCTGAAGTCGTTCGACGACGATGGCCgcgtgggcgtgggtaggtataggccaggtcgccgtacacatcgtcttccagaatcgccacgtcatagcgttgggcgaggctcagcagggccttcttgcgtgcctcgggcatga < 6:254084‑M2/149‑114 (MQ=255) gcccacgcACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCAcc > 4:99927/1‑149 (MQ=255) ccacgcACCCTGAAGTCGTTCGACGACGATGGCCgcgtgggcgtgggtaggtataggccaggtcgccgtacacatcgtcttccagaatcgccacgtcatagcgttgggcgaggctcagcagggccttcttgcgtgcctcgggcatgatg < 5:346814‑M2/149‑116 (MQ=255) ccacgcACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCgg > 2:66101/1‑149 (MQ=255) acgcACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGgca < 3:13011/149‑1 (MQ=255) gcACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGgcag > 5:116593/1‑148 (MQ=255) aCCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCAc > 6:333527/1‑149 (MQ=255) cTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAACACCGGCAGCACCgc < 3:88921/149‑1 (MQ=255) cTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGAGCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCgc < 2:232703/149‑1 (MQ=255) gAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAACCCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCgcca < 5:54732/149‑1 (MQ=255) ttCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCgccagc > 7:67889/1‑144 (MQ=255) ttCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCgccagc < 8:67889/144‑1 (MQ=255) gacgacgaTGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCGCCAGCCAGCCt > 6:344357/1‑147 (MQ=255) gacgaTGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGtgctg < 6:58695/102‑1 (MQ=255) gacgaTGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGtgctg > 5:58695/1‑102 (MQ=255) cgaTGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCGCCAGCCAGCCTCAGCTgg < 2:118124/149‑1 (MQ=255) gaTGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCGCCAGCCAGCCTCAGCTgg < 8:91034/148‑1 (MQ=255) | TCATGCCCGAGGCACGCAAGAAGGCCCTGCTGAGCCTCGCCCAACGCTATGACGTGGCGATTCTGGAAGACGATGTGTACGGCGACCTGGCCTATACCTACCCACGCCCACGCACCCTGAAGTCGTTCGACGACGATGGCCGCGTGCTGCTCTGCAGTTCGTTCTCCAAAACCCTCGCGCCCGGCCTGCGGATCGGCTGGGTGGCG‑CCCGGGCGCTACCTGGAGCGCGTGCTGCACATGAAATACATCAGCACCGGCAGCACCGCCAGCCAGCCTCAGCTGG > NC_002947/6024407‑6024688 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |