| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6178538 = | 74 (1.370) | 5 (0.100) | 5/252 | NT | 6.9% | coding (540/1545 nt) | atpA | ATP synthase subunit alpha |
| ? | NC_002947 | 6178598 = | 64 (1.220) | coding (480/1545 nt) | atpA | ATP synthase subunit alpha | |||||
GAGAAAGTGGCTCCAGGCGTGATCTGGCGTAAGTCGGTAGACCAGCCTGTACAGACTGGTTACAAATCCGTCGACGCCATGATCCCTGTCGGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6178687‑6178538‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGACAGGGATCATGGCGTCGACGGATTTGTAACCAGTCTGTACAGGCTGGTCTACCGACTTACGCCAGATCACGCCTGGAGCCACTTTCTCGACTGCGTCGGTCTGGGTGTTGCCCAGAGGACCT > NC_002947/6178598‑6178721 GAGAAAGTGGCTCCAGGCGTGATCTGGCGTAAGTCGGTAGACCAGCCTGTACAGACTGGTTACAAATCCGTCGACGCCATGATCCCTGTCGGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGC > 4:92374/1‑149GAGAAAGTGGCTCCAGGCGTGATCTGGCGTAAGTCGGTAGACCAGCCTGTACAGACTGGTTACAAATCCGTCGACGCCATGATCCCTGTCGGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGC > 5:221034/1‑149GAGAAAGTGGCTCCAGGCGTGATCTGGCGTAAGTCGGTAGACCAGCCTGTACAGACTGGTTACAAATCCGTCGACGCCATGATCCCTGTCGGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGC > 7:23141/1‑149 GAAAGTGGCTCCAGGCGTGATCTGGCGTAAGTCGGTAGACCAGCCAGTACAGACTGGTTACAAATCCGTCGACGCCATGATCCCTCTCGGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCACATCGGCAAGACCGCCATGGCC > 7:299187/1‑148 CCTGTCGGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGCCGACAGGGATCATGGCGTCGACGGATTTGTAACCAGTCTGTACAGGCTGGTCTACCGACTTACGCCAGATCACGCCTGGAGCCA > 8:288719/1‑149 GGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGCCGACAGGGATCATGGCGTCGACGGATTTGTAACCAGTCTGTACAGGCTGGTCTACCGACTTACGCCAGATCACGCCTGGAGCCACTTTCT > 3:138357/1‑149 GTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGCCGACAGGGATCATGGCGTCGACGGATTTGTAACCAGTCTGTACAGGCTGGTCTACCGACTTACGCCAGATCACGCCTGGAGCCACTTTCTCGAC > 7:139755/1‑149 GCGACCGTCAGATCGGCAAGACCGCCATGGCCGACAGGGATCATGGCGTCGACGGATTTGTAACCAGTCTGTACAGGCTGGTCTACCGACTTACGCCAGATCACGCCTGGAGCCACTTTCTCGACTGCGTCGGTCTGGGTGTTGCCCA < 4:138357/148‑1 TCAGATCGGCAAGACCGCCATGGCCGACAGGGATCATGGCGTCGACGGATTTGTAACCAGTCTGTACAGGCTGGTCTACCGACTTACGCCAGATCACGCCTGGAGCCACTTTCTCGACTGCGTCGGTCTGGGTGTTGCCCAGAGGACCT < 8:139755/149‑1 GAGAAAGTGGCTCCAGGCGTGATCTGGCGTAAGTCGGTAGACCAGCCTGTACAGACTGGTTACAAATCCGTCGACGCCATGATCCCTGTCGGCCGTGGCCAGCGTGAGCTGATCATTGGCGACCGTCAGATCGGCAAGACCGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6178687‑6178538‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGACAGGGATCATGGCGTCGACGGATTTGTAACCAGTCTGTACAGGCTGGTCTACCGACTTACGCCAGATCACGCCTGGAGCCACTTTCTCGACTGCGTCGGTCTGGGTGTTGCCCAGAGGACCT > NC_002947/6178598‑6178721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |