New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	926480 =	30 (0.550)	4 (0.080)	4/248	NT	11.2%	coding (146/1437 nt)	PP_0805	outer membrane efflux protein
	?	NC_002947	926511 =	35 (0.680)					coding (115/1437 nt)	PP_0805	outer membrane efflux protein

GATGCCTTCGCCCTGCTTGTAAAGGTTGCCGATGGCCTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCAC  >  NC_002947/926332‑926625                                                                                                                                                       |                                                                                                                                                    gATGCCTTCGCCCTGCTTGTAAAGGTTGCCGATGGCCTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCtt                                                                                                                                                     >  3:333017/1‑149 (MQ=255)  aTGCCTTCGCCCTGCTTGTAAAGGTTGCCGATGGCCTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTc                                                                                                                                                    >  3:279907/1‑149 (MQ=255)           cccGGCTTTAAACGGTTGCCGCGGGCCCCCGCGAGGCTCGGGGCCCATGGCGCTGCGTGCCCCCCCGGGTCGTA‑AGGGGTCCGCCGTTCGCCCCGGCCGCCGGGGGCCTTGCCGTGGGGGGGGGGGGGGGG‑CACCGCTTCGGGCGCATc                                                                                                                                           <  4:302253/149‑1 (MQ=255)                  cagcagtaagggaattatgtgaagcgaagcagtccgctgtcaccgctgttgctgggagccttcgggctcctggccctgaacttccacccggttgcccaggcagccgatgatatagacccccacctgcgccagaTCGGGCGCATcgcg                                                                                                                                        <  4:311922‑M1/14‑1 (MQ=255)                     aagggTTCCCGTTGCCCGCCGCGAGGCCGGGGGCCCTTTGCGCGGCCTGCCCCCCGGCGGCGTT‑ACGGGTCCGCCGTCCGCCACTGCCCCCGGGGGCCATGCCTTGGGGGGGGGGGGCGGG‑CACCGCTTCGGGCGCATCGCGTagcagc                                                                                                                                 <  4:333017/146‑1 (MQ=255)                         gTTGCCGATGGCCTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACg                                                                                                                             >  5:335018/1‑149 (MQ=255)                           tGCCGATGGCCTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGc                                                                                                                           >  5:279310/1‑149 (MQ=255)                              cGATGGCCTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGccc                                                                                                                         >  2:235708/1‑148 (MQ=255)                              cGATGGCCTCAGAGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACAGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGAGGGCGCG‑CACCCCTTCGGCCGCATCGCGTAGAAGCGAAGGccc                                                                                                                         >  4:264154/1‑148 (MQ=255)                                     cTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGgc                                                                                                                 >  7:315388/1‑149 (MQ=255)                                       aagcgaagcagtccgctgtcaccgctgttgctgggagccttcgggctcctggccctgaacttccacccggttgcccaggcagccgatgatatagacccccacctgcgccagaTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTgg                                                                                                                  >  3:311922‑M1/113‑148 (MQ=255)                                                    cgctgtcaccgctgttgctgggagccttcgggctcctggccctgaacttccacccggttgcccaggcagccgatgatatagacccccacctgcgccagaTCGGGCGCATCGCGTAGCAGCGACGGCCCGATc                                                                                                                     <  4:231651‑M1/33‑1 (MQ=255)                                                    cgctgtcaccgctgttgctgggagccttcgggctcctggccctgaacttccacccggttgcccaggcagccgatgatatagacccccacctgcgccagaTCGGGCGCATCGCGTAGCAGCGACGGCCCGATc                                                                                                                     >  3:231651‑M1/100‑132 (MQ=255)                                                        cATTGCGCTGCCTGCAGCACCGCGTCGGTGAAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAg                                                                                                             >  1:201164/1‑135 (MQ=255)                                                        cATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTatat                                                                                               >  1:300498/1‑148 (MQ=255)                                                         aTTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGTGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGAGACGGCCCGATCTGGCGCAGGTGGGGGTCTATatca                                                                                             >  5:243516/1‑149 (MQ=255)                                                         aTTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAgg                                                                                                            >  3:165375/1‑134 (MQ=255)                                                         aTTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAgg                                                                                                            >  3:160125/1‑134 (MQ=255)                                                                    tgcAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTg                                                                                  >  1:101693/1‑149 (MQ=255)                                                                     gcagcaCCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCtat                                                                                                 >  5:347703/1‑133 (MQ=255)                                                                       agcaCCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTAGCGCAGGTGGGGGTCTATATCATCGGCTGCCTggg                                                                                >  5:158371/1‑148 (MQ=255)                                                                                  ggT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATAACATCGGCTGCCTGGGCAC‑CCGGGTgg                                                                    >  5:201239/1‑148 (MQ=255)                                                                                         gCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGGCGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGtt                                                               >  3:202823/1‑147 (MQ=255)                                                                                         gCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑c                                                                           >  7:133641/1‑135 (MQ=255)                                                                                           tCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAgg                                                           >  7:236770/1‑149 (MQ=255)                                                                                           gcccccGTTCGCCCGTGGCTCCGGGGCCCTTGCCGTTGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAgg                                                           <  6:335018/145‑1 (MQ=255)                                                                                             aGCCGTTGGCCACGGGCGCCCGGGGCCATGCCGAGGGGGGGGGGGGGGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTCCCTGGGCAA‑CCGGGTGGAAGTTCAgg                                                           <  1:8743/147‑1 (MQ=255)                                                                                                      ccACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑AACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGccc                                                >  1:264731/1‑149 (MQ=255)                                                                                                           ggCGACGGGGGCCAGGCGGTGGGGGGGGGGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAAGCCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAg                                            <  1:216099/149‑1 (MQ=255)                                                                                                            gCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGc                                          >  4:238706/1‑149 (MQ=255)                                                                                                                                       ggggcgggcCACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGAc               <  2:101693/148‑1 (MQ=255)                                                                                                                                            ggg‑cACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                  >  4:162631/1‑140 (MQ=255)                                                                                                                                            ggg‑cACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                  <  3:162631/140‑1 (MQ=255)                                                                                                                                            ggg‑cACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTgcttc         <  8:315388/149‑1 (MQ=255)                                                                                                                                                 aCCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGccc                                                >  4:145234/1‑107 (MQ=255)                                                                                                                                                 aCCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGccc                                                <  3:145234/107‑1 (MQ=255)                                                                                                                                                   cGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAg                                   >  7:315745/1‑117 (MQ=255)                                                                                                                                                   cGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAg                                   <  8:315745/117‑1 (MQ=255)                                                                                                                                                     cTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCTCCCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTcac  <  1:235708/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                    GATGCCTTCGCCCTGCTTGTAAAGGTTGCCGATGGCCTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCAC  >  NC_002947/926332‑926625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.