New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	926480 =	30 (0.550)	4 (0.080)	4/248	NT	11.2%	coding (146/1437 nt)	PP_0805	outer membrane efflux protein
	?	NC_002947	926511 =	35 (0.680)					coding (115/1437 nt)	PP_0805	outer membrane efflux protein

CTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATTCCCTTACTGCTGGTCGTCCATGCCGCCG  >  NC_002947/926368‑926659                                                                                                                                                  |                                                                                                                                                       cTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGgc                                                                                                                                                   >  7:315388/1‑149 (MQ=255)   aagcgaagcagtccgctgtcaccgctgttgctgggagccttcgggctcctggccctgaacttccacccggttgcccaggcagccgatgatatagacccccacctgcgccagaTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTgg                                                                                                                                                    >  3:311922‑M1/113‑148 (MQ=255)                cgctgtcaccgctgttgctgggagccttcgggctcctggccctgaacttccacccggttgcccaggcagccgatgatatagacccccacctgcgccagaTCGGGCGCATCGCGTAGCAGCGACGGCCCGATc                                                                                                                                                       <  4:231651‑M1/33‑1 (MQ=255)                cgctgtcaccgctgttgctgggagccttcgggctcctggccctgaacttccacccggttgcccaggcagccgatgatatagacccccacctgcgccagaTCGGGCGCATCGCGTAGCAGCGACGGCCCGATc                                                                                                                                                       >  3:231651‑M1/100‑132 (MQ=255)                    cATTGCGCTGCCTGCAGCACCGCGTCGGTGAAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAg                                                                                                                                               >  1:201164/1‑135 (MQ=255)                    cATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTatat                                                                                                                                 >  1:300498/1‑148 (MQ=255)                     aTTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGTGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGAGACGGCCCGATCTGGCGCAGGTGGGGGTCTATatca                                                                                                                               >  5:243516/1‑149 (MQ=255)                     aTTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAgg                                                                                                                                              >  3:160125/1‑134 (MQ=255)                     aTTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAgg                                                                                                                                              >  3:165375/1‑134 (MQ=255)                                tgcAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTg                                                                                                                    >  1:101693/1‑149 (MQ=255)                                 gcagcaCCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCtat                                                                                                                                   >  5:347703/1‑133 (MQ=255)                                   agcaCCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTAGCGCAGGTGGGGGTCTATATCATCGGCTGCCTggg                                                                                                                  >  5:158371/1‑148 (MQ=255)                                              ggT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATAACATCGGCTGCCTGGGCAC‑CCGGGTgg                                                                                                      >  5:201239/1‑148 (MQ=255)                                                     gCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGGCGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGtt                                                                                                 >  3:202823/1‑147 (MQ=255)                                                     gCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑c                                                                                                             >  7:133641/1‑135 (MQ=255)                                                       tCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAgg                                                                                             >  7:236770/1‑149 (MQ=255)                                                       gcccccGTTCGCCCGTGGCTCCGGGGCCCTTGCCGTTGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAgg                                                                                             <  6:335018/145‑1 (MQ=255)                                                         aGCCGTTGGCCACGGGCGCCCGGGGCCATGCCGAGGGGGGGGGGGGGGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTCCCTGGGCAA‑CCGGGTGGAAGTTCAgg                                                                                             <  1:8743/147‑1 (MQ=255)                                                                  ccACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑AACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGccc                                                                                  >  1:264731/1‑149 (MQ=255)                                                                       ggCGACGGGGGCCAGGCGGTGGGGGGGGGGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAAGCCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAg                                                                              <  1:216099/149‑1 (MQ=255)                                                                        gCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGc                                                                            >  4:238706/1‑149 (MQ=255)                                                                                                   ggggcgggcCACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGAc                                                 <  2:101693/148‑1 (MQ=255)                                                                                                        ggg‑cACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                                                    >  4:162631/1‑140 (MQ=255)                                                                                                        ggg‑cACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                                                    <  3:162631/140‑1 (MQ=255)                                                                                                        ggg‑cACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTgcttc                                           <  8:315388/149‑1 (MQ=255)                                                                                                             aCCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGccc                                                                                  >  4:145234/1‑107 (MQ=255)                                                                                                             aCCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGccc                                                                                  <  3:145234/107‑1 (MQ=255)                                                                                                              ccagatcgggccgtcgctgctacgcgatgcgcccgaTCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTgcttcgctt                                       >  3:311922‑M2/37‑148 (MQ=255)                                                                                                               cGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAg                                                                     <  8:315745/117‑1 (MQ=255)                                                                                                               cGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAg                                                                     >  7:315745/1‑117 (MQ=255)                                                                                                                 gatcgggccgtcgctgctacgcgatgcgcccgaTCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                                                    >  3:231651‑M2/34‑132 (MQ=255)                                                                                                                 gatcgggccgtcgctgctacgcgatgcgcccgaTCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                                                    <  4:231651‑M2/99‑1 (MQ=255)                                                                                                                 cTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCTCCCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTcac                                    <  1:235708/149‑1 (MQ=255)                                                                                                                     GGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAAt                               <  6:211142‑M1/149‑1 (MQ=255)                                                                                                                         gcATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                                                    <  6:115396/124‑1 (MQ=255)                                                                                                                         gcATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCg                                                    >  5:115396/1‑124 (MQ=255)                                                                                                                            gcgcgCAGCAGCGACGGCCCGATCGCCCGCCGGCGGGCGGCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATTCCCTTa                        <  8:236770/148‑1 (MQ=255)                                                                                                                             ggcgTAGCAGCGCCGGCCCGATCTGGCGCTGGGGGGGGTCTATAACATCGGCTGCCTGGGCAA‑CCGTGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATTCCCTTa                        <  6:201239/147‑1 (MQ=255)                                                                                                                               cgTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATTCCCTTActg                     <  3:238706/149‑1 (MQ=255)                                                                                                                                  cgcagcGACGCCCCGATCTGGCGCAGGGGCGCGCCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATACCCTTActgctg                  <  4:61907/148‑1 (MQ=255)                                                                                                                                    cgcgatgcgcccgaTCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATTCCCTTActgctg                  <  4:311922‑M2/133‑1 (MQ=255)                                                                                                                                      gcGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTg                                               >  3:253226/1‑116 (MQ=255)                                                                                                                                      gcGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTg                                               <  4:253226/116‑1 (MQ=255)                                                                                                                                                  tCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATTCCCTTACTGCTGGTCGTCCATGccgccg  >  4:142808/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                       CTCAGCGATGCTCGGGTGCCATTGCGCTGCCTGCAGCACCGCGTCGGT‑AAGGCTCAGCCGTTCGCCACTGGCGACCGGGGCCATGCCGATGGGGGGGCGGGCGGG‑CACCGCTTCGGGCGCATCGCGTAGCAGCGACGGCCCGATCTGGCGCAGGTGGGGGTCTATATCATCGGCTGCCTGGGCAA‑CCGGGTGGAAGTTCAGGGCCAGGAGCCCGAAGGCT‑CCCAGCAACAGCGGTGACAGCGGACTGCTTCGCTTCACATAATTCCCTTACTGCTGGTCGTCCATGCCGCCG  >  NC_002947/926368‑926659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.