New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1190570 =	36 (0.670)	3 (0.060)	3/248	NT	7.2%	coding (92/966 nt)	xcpX	type II secretion system protein K
	?	NC_002947	1190631 =	43 (0.830)					coding (153/966 nt)	xcpX	type II secretion system protein K

TGAAACACCCCGCGTGTTGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGG  >  NC_002947/1190424‑1190717                                                                                                                                                   |                                                                                                                                                    tGAAACACCCCGCGTGTTGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATg                                                                                                                                                   >  4:17156/1‑149 (MQ=255) gctggtcgcgtacccgcaactgcgcctggccagcgccaaagtcgtagttcagcggctgcccgcgcaaggcttgccagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctccATg                                                                                                                                                   <  3:195097‑M1/3‑1 (MQ=255)   tggtcgcgtacccgcaactgcgcctggccagcgccaaagtcgtagttcagcggctgcccgcgcaaggcttgccagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctccATGGc                                                                                                                                                 <  6:139420‑M1/5‑1 (MQ=255)    aaCACCCCGCGTGTTGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGcc                                                                                                                                                >  8:206222/1‑149 (MQ=255)    aaCACCCCGCGTGTTGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGcc                                                                                                                                                <  7:206222/149‑1 (MQ=255)     gtcgcgtacccgcaactgcgcctggccagcgccaaagtcgtagttcagcggctgcccgcgcaaggcttgccagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctccATGGcc                                                                                                                                                >  5:150058‑M1/143‑148 (MQ=255)     gtcgcgtacccgcaactgcgcctggccagcgccaaagtcgtagttcagcggctgcccgcgcaaggcttgccagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctccATGGcc                                                                                                                                                >  5:301782‑M1/143‑148 (MQ=255)       acCCCGCGTGTTGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGc                                                                                                                                             <  8:33767/149‑1 (MQ=255)           ctcgTGTTGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCa                                                                                                                                         <  6:174398/147‑1 (MQ=255)                 ttGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTcga                                                                                                                                   <  3:182270/149‑1 (MQ=255)                          gTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTgcg                                                                                                                          >  7:80045/1‑149 (MQ=255)                          gTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTgcg                                                                                                                          >  7:35132/1‑149 (MQ=255)                                     gcgagcgaGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCAc                                                                                                                >  8:191858/1‑148 (MQ=255)                                       gagcgagGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAg                                                                                                             >  2:239130/1‑149 (MQ=255)                                              gCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTg                                                                                                       >  5:159359/1‑148 (MQ=255)                                                aTGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGGAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAg                                                                                                    >  8:16199/1‑149 (MQ=255)                                                aTGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAg                                                                                                    >  1:175893/1‑149 (MQ=255)                                                   cagggATGGGTGGAAGGGAACAGCTGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGGGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGt                                                                                                  <  8:35132/145‑1 (MQ=255)                                                             tGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATg                                                                                        >  1:81038/1‑148 (MQ=255)                                                              gcgcaaggcttgccagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctccATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGa                                                                                      >  5:139420‑M1/86‑149 (MQ=255)                                                                 aGGCAACAGCAGGGTGCGGCCCTTTTGGTGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAg                                                                                     >  7:110844/1‑147 (MQ=255)                                                                     aaCAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAggcc                                                                               <  8:80045/149‑1 (MQ=255)                                                                          ccagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctcca                                                                                                                                                     >  6:213870‑M1/74‑74 (MQ=255)                                                                           cagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctccATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATg                                                                                        <  4:280100‑M1/62‑1 (MQ=255)                                                                           cagaacagcggactgagccgccaggcggggtcacgcagggcctgcccggcataggccaggccggcctgctccATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATg                                                                                        >  3:280100‑M1/73‑134 (MQ=255)                                                                                    cccTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGcc                                                                >  6:309654/1‑149 (MQ=255)                                                                                    cccTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTAAGcc                                                                <  2:81038/149‑1 (MQ=255)                                                                                             tggtgatggtgGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCTGCCCGGCATAGGCCAggccggcc                                                       <  7:191858/149‑1 (MQ=255)                                                                                             tggtgatggtgGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGcc                                                       <  5:309654/149‑1 (MQ=255)                                                                                                tgatggtgGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTg                                                    >  7:155137/1‑149 (MQ=255)                                                                                                          gCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCg                                          >  1:189760/1‑149 (MQ=255)                                                                                                            tGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAg                                                                                                                              >  5:84460/1‑63 (MQ=255)                                                                                                            tGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAg                                                                                                                              <  6:84460/63‑1 (MQ=255)                                                                                                              gCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGGAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCt                                       <  7:16199/148‑1 (MQ=255)                                                                                                                aaTGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTggc                                    >  1:321152/1‑149 (MQ=255)                                                                                                                  tGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTggcgg                                  <  2:175893/149‑1 (MQ=255)                                                                                                                  tGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTggcgg                                  <  2:321152/149‑1 (MQ=255)                                                                                                                     tGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCt                                >  2:331478/1‑148 (MQ=255)                                                                                                                            gggCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGc                        >  6:117610/1‑149 (MQ=255)                                                                                                                             ggCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCt                       <  3:17156/149‑1 (MQ=255)                                                                                                                             ggCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCt                       <  8:155137/149‑1 (MQ=255)                                                                                                                                  ggCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTggc                                    >  3:249804/1‑131 (MQ=255)                                                                                                                                  ggCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTggc                                    <  4:249804/131‑1 (MQ=255)                                                                                                                                  ggCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCt                  >  7:311169/1‑149 (MQ=255)                                                                                                                                            gtggAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCtt        >  1:157195/1‑149 (MQ=255)                                                                                                                                              ggAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTc                               >  2:158777/1‑124 (MQ=255)                                                                                                                                              ggAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTc                               <  1:158777/124‑1 (MQ=255)                                                                                                                                               gAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCtt        <  2:329308/146‑1 (MQ=255)                                                                                                                                               gAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCtt        >  1:329308/1‑146 (MQ=255)                                                                                                                                                  gATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCgg  >  5:100123/1‑149 (MQ=255)                                                                                                                                                  gATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCgg  <  6:159359/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGAAACACCCCGCGTGTTGACTGGCGTTTTTATTCCGCGAGCGAGGCATGCACGGATGGGTGGAAGGCAACAGCAGGGTGCGGCCCTTTTGATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGG  >  NC_002947/1190424‑1190717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.