New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2299637 =	45 (0.830)	3 (0.060)	3/250	NT	6.0%	coding (485/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	2299677 =	50 (0.960)					coding (445/3645 nt)	sbcC	exonuclease subunit SbcC

GCTTCGCGCGCCTTGCTGAAGGCACGCTGGCCCAGGCGGGTGTAGATCGCGGTGTTGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGCCTTGTCGCGGGCGCGGTT  >  NC_002947/2299490‑2299782                                                                                                                                                    |                                                                                                                                                  tcggcatcgacggccgccgctaccgcgcccgctgggaagccaaccgcgcccgcgacaaggccaacggcaaactgcagcacagccgtcaaagcttctacgacctcgacagcgagcaagtgctcggcagtggcaagaacgaatacaagcaa                                                                                                                                                  >  5:23518‑M1/148‑149 (MQ=255)               gCTGAAGGCACGCTGGCCCAGGCGGGTGTAGATCGCGGTGTTGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGtt                                                                                                                                      >  1:335352/1‑147 (MQ=255)                                   ggaagccaaccgcgcccgcgacaaggccaacggcaaactgcagcacagccgtcaaagcttctacgacctcgacagcgagcaagtgctcggcagtggcaagaacgaatacaagcAACTg                                                                                                                                               <  5:336269‑M1/5‑1 (MQ=255)                                   ggaagccaaccgcgcccgcgacaaggccaacggcaaactgcagcacagccgtcaaagcttctacgacctcgacagcgagcaagtgctcggcagtggcaagaacgaatacaagcAACTg                                                                                                                                               >  6:336269‑M1/114‑118 (MQ=255)                                      gggTGTAGATCGCGGTGTTGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGt                                                                                                             >  3:306770/1‑149 (MQ=255)                                         caaccgcgcccgcgacaaggccaacggcaaactgcagcacagccgtcaaagcttctacgacctcgacagcgagcaagtgctcggcagtagcaagaacgaatacaagcAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGc                                                                                                          >  6:59341‑M1/108‑149 (MQ=255)                                            aGATCGCGGTGTTGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTg                                                                                                       >  4:234575/1‑149 (MQ=255)                                                 gcgGTGTTGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTc                                                                                                  >  3:56557/1‑149 (MQ=255)                                                    gtgtTGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGtt                                                                                               <  4:306770/149‑1 (MQ=255)                                                       ttGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCt                                                                                             <  2:335352/148‑1 (MQ=255)                                                       ttGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCt                                                                                             <  3:234575/148‑1 (MQ=255)                                                           tGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCa                                                                                        >  6:233775/1‑149 (MQ=255)                                                                atttCCAGAAACTCGCTACGGTCATTGACCTCCGCCTTGAGGAACGAGCCGAACTCGCTCTGGGCCAGAATCACCTAACGGGTGAACTGTTCGAAGTTCAGGCCCATACGGCCTTCGACCACATGCTAGTATTCGTTCTTGCCACAGcc                                                                                   >  4:162517/2‑149 (MQ=255)                                                                  ttCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTc                                                                                                  <  1:18084/132‑1 (MQ=255)                                                                  ttCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTc                                                                                                  >  2:18084/1‑132 (MQ=255)                                                                      aGCAACTCGCTAGGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCAc                                                                             <  3:162517/149‑1 (MQ=255)                                                                      aGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGaa                                                                                                                                         <  5:48958/89‑1 (MQ=255)                                                                      aGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGaa                                                                                                                                         >  6:48958/1‑89 (MQ=255)                                                                       gCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACt                                                                            >  6:94251/1‑149 (MQ=255)                                                                        cAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACtt                                                                           >  8:159682/1‑149 (MQ=255)                                                                         aaCTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCt                                                                                                                      >  1:13857/1‑105 (MQ=255)                                                                         aaCTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCt                                                                                                                      <  2:13857/105‑1 (MQ=255)                                                                          aCTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGc                                                                         >  3:102327/1‑149 (MQ=255)                                                                                tACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTg                                                                   >  4:130973/1‑149 (MQ=255)                                                                                  cGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTc                                                                 <  3:130973/149‑1 (MQ=255)                                                                                     tCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAg                                                              <  7:159682/149‑1 (MQ=255)                                                                                       tttGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGt                                                            >  1:211342/1‑149 (MQ=255)                                                                                        aaagcttctacgacctcgacagcgagcaagtgctcggcagtggcaagaacgaatacaagcAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGa                                                                                                                  >  1:90408‑M1/61‑94 (MQ=255)                                                                                        aaagcttctacgacctcgacagcgagcaagtgctcggcagtggcaagaacgaatacaagcAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGa                                                                                                                  <  2:90408‑M1/34‑1 (MQ=255)                                                                                                   cTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCttt                                                >  5:109612/1‑149 (MQ=255)                                                                                                    ttGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCttt                                                >  2:101483/1‑148 (MQ=255)                                                                                                     tGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGa                                              >  1:151055/1‑149 (MQ=255)                                                                                                      gAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTg                                               <  4:102327/147‑1 (MQ=255)                                                                                                      gAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGa                                              <  5:233775/148‑1 (MQ=255)                                                                                                        ggAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACgg                                           >  3:50905/1‑149 (MQ=255)                                                                                                              cgcCGAACTCTCTCTGGGCCAGCATCACCGGACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGtgc                                     <  8:250595/149‑1 (MQ=255)                                                                                                               gcCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGtgct                                    >  4:131130/1‑149 (MQ=255)                                                                                                                  gAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCa                                 <  4:56557/149‑1 (MQ=255)                                                                                                                  gAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGAGCTGCa                                 <  2:211342/149‑1 (MQ=255)                                                                                                                      tCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCAc                                                                             <  5:153758/101‑1 (MQ=255)                                                                                                                      tCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCAc                                                                             >  6:153758/1‑101 (MQ=255)                                                                                                                       cGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTg                            >  8:121988/1‑149 (MQ=255)                                                                                                                         ctctGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGcc                          <  6:109612/149‑1 (MQ=255)                                                                                                                         ctctGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGcc                          >  4:39071/1‑149 (MQ=255)                                                                                                                              ggCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGt                        <  3:131130/146‑1 (MQ=255)                                                                                                                               gCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGc                    <  1:101483/149‑1 (MQ=255)                                                                                                                                ccAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGcc                   >  1:34726/1‑149 (MQ=255)                                                                                                                                  aGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGCCtt                 <  7:121988/149‑1 (MQ=255)                                                                                                                                    cATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGCCTTGt               >  6:133643/1‑149 (MQ=255)                                                                                                                                           gCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGCCTTGTCGCGGgc        >  2:110090/1‑149 (MQ=255)                                                                                                                                            cACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGCCTTGTCGCGGgcg       <  5:94251/149‑1 (MQ=255)                                                                                                                                                 gTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGCCTTGTCGCGGGCGCGGtt  <  3:39071/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCTTCGCGCGCCTTGCTGAAGGCACGCTGGCCCAGGCGGGTGTAGATCGCGGTGTTGGTGAGCTTTTCCAGCAACTCGCTACGGTCTTTGTCGTCGGCCTTGAGGAACGCGCCGAACTCGCTCTGGGCCAGCATCACCGCACGGGTGAACTGTTCGAAGTTCAGGCCCAGACGGGCTTCGACCAGTTGCTTGTATTCGTTCTTGCCACTGCCGAGCACTTGCTCGCTGTCGAGGTCGTAGAAGCTTTGACGGCTGTGCTGCAGTTTGCCGTTGGCCTTGTCGCGGGCGCGGTT  >  NC_002947/2299490‑2299782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.