New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2307870 | 45 (0.830) | 3 (0.060) | 3/252 | NT | 6.4% | coding (247/495 nt) | PP_2030 | hypothetical protein |
? | NC_002947 | = 2307899 | 44 (0.840) | coding (218/495 nt) | PP_2030 | hypothetical protein |
CCATCCAGCGGGTCAGGCCGGCGGCCGGGCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAGCCGCCACAGGCCCCAGCCCAGGAGT > NC_002947/2307723‑2308018 | ccATCCAGCGGGTCAGGCCGGCGGCCGGGCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCgccg > 7:145034/1‑149 (MQ=255) aGCGGGTCAGGCCGGCGGCCGGGCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCggg < 6:299748/149‑1 (MQ=255) tCAGGCCGGCGGCCGGGCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCg < 8:145034/149‑1 (MQ=255) gCCGGCGGCCGGGCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCa > 5:211581/1‑148 (MQ=255) ggcCGGGCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGc < 6:53413/149‑1 (MQ=255) gggCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCATCATACGGGCGTgg < 1:114415/149‑1 (MQ=255) ttATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGc > 1:120893/1‑149 (MQ=255) tCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGGGGCAGGCGGGCCa < 3:179624/148‑1 (MQ=255) ccAGAAAGGCCGGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGc > 5:89777/1‑149 (MQ=255) aGAAAGGCCCGCCACTCGCGGCCGTTGAGGGGGTGGCTGTGGGCGCCTGGGTAGTGGGTGCGGCACAGGCGCTTGAGCAGGGCGTGGAGCTGTTGCAGCCAGGCGCCtgccacgcccgtatgacggcgccccggccggcgcctggctgc < 1:301995‑M1/149‑43 (MQ=255) aGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTc > 1:264762/1‑149 (MQ=255) aGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTc > 6:164730/1‑149 (MQ=255) aGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTc > 1:144386/1‑149 (MQ=255) gAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCg > 2:101595/1‑149 (MQ=255) gccagccaCTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCaa < 2:120893/149‑1 (MQ=255) cagccaCTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGc > 5:269994/1‑144 (MQ=255) cagccaCTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGc < 6:269994/144‑1 (MQ=255) cagccaCTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAgg > 6:221269/1‑149 (MQ=255) gcgGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAgg < 8:195895/148‑1 (MQ=255) gcgGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGgc > 7:95930/1‑149 (MQ=255) gcgGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGgc > 7:100688/1‑149 (MQ=255) gCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCtgccacgcccgtatgacggcgccccggccggcgcctggc > 8:196971‑M1/1‑87 (MQ=255) gCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCtgccacgcccgtatgacggcgccccggccggcgcctggc < 7:196971‑M1/126‑40 (MQ=255) ccGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCAc < 2:264762/149‑1 (MQ=255) gggTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGc < 8:210853/115‑1 (MQ=255) gggTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGc > 7:210853/1‑115 (MQ=255) gggTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTc > 6:352193/1‑148 (MQ=255) gtgGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAggg > 6:242040/1‑149 (MQ=255) gtgGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAggg < 5:221269/149‑1 (MQ=255) tgGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAgg > 6:145538‑M2/1‑103 (MQ=255) tgGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAgg < 5:145538‑M2/105‑3 (MQ=255) gTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGgttgtt > 3:279616/1‑149 (MQ=255) tGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCa > 1:210865/1‑149 (MQ=255) ggTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCAc > 6:157023/1‑148 (MQ=255) tAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGAGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGAt > 8:34027/1‑149 (MQ=255) aGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATg > 5:165128/1‑149 (MQ=255) gTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATgc > 3:96821/1‑149 (MQ=255) gTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATgc < 2:210865/149‑1 (MQ=255) tGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGcc > 2:257655/1‑99 (MQ=255) tGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGcc < 1:257655/99‑1 (MQ=255) tGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATgcg < 5:164730/149‑1 (MQ=255) tGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCCTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATgcg > 4:112883/1‑149 (MQ=255) cGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGttt < 1:101595/149‑1 (MQ=255) cGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGtt < 5:157023/148‑1 (MQ=255) cacaGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGcc > 6:134894/1‑149 (MQ=255) gCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAgcgg > 6:269033/1‑149 (MQ=255) cAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAgcggc < 2:144386/149‑1 (MQ=255) gTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAgcc < 5:242040/149‑1 (MQ=255) gATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAgccgc < 4:96821/148‑1 (MQ=255) ttGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAGCCGCCACAGGc > 2:8860/1‑149 (MQ=255) gCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAggcgcctggctgcaacagctccacgccctgctcaagcgcctgtgccgcacccactacccaggcgcccacagccaccccctcaacggccgcgagtggcgggcctttct < 1:301995‑M2/149‑108 (MQ=255) gCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAggcgcctggctgcaacagatcaacgccctgctcaagcgcctgtgccgcaaccactacccaggcgccaacagccacaccctcaacggc < 7:196971‑M2/126‑88 (MQ=255) gCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAggcgcctggctgcaacagatcaacgccctgctcaagcgcctgtgccgcaaccactacccaggcgccaacagccacaccctcaacggc > 8:196971‑M2/1‑39 (MQ=255) ccAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAGCCGCCACAGGCcccagc < 5:134894/149‑1 (MQ=255) gccggccgGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAGCCGCCACAGGCCCCAGCCCAGGa < 6:165128/149‑1 (MQ=255) cctgccacgcccgtatgacggcgccccggccggcgcctggctgcaacagatcaacgccctgctcaagcgcctgtgccgcaaccactacccaggcgccaacagcca < 5:145538‑M1/105‑104 (MQ=255) cctgccacgcccgtatgacggcgccccggccggcgcctggctgcaacagatcaacgccctgctcaagcgcctgtgccgcaaccactacccaggcgccaacagcca > 6:145538‑M1/1‑2 (MQ=255) ccggccggGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAGCCGCCACAGG‑CCCAGCCCAGGAGt < 3:112883/149‑1 (MQ=255) | CCATCCAGCGGGTCAGGCCGGCGGCCGGGCAGCGGTTATCCAGAAAGGCCAGCCACTCGCGGCCGTTGAGGGTGTGGCTGTTGGCGCCTGGGTAGTGGTTGCGGCACAGGCGCTTGAGCAGGGCGTTGATCTGTTGCAGCCAGGCGCCGGCCGGGGCGCCGTCATACGGGCGTGGCAGGCGGGCCAGCTCGGCCAAGGCCTCCAGGCGCACCGGGTCCAGGGGTTGTTCGGCGCGCACGATGCGGCGTTTGCCCGGGCGCCAGCGGCGCAGCCGCCACAGGCCCCAGCCCAGGAGT > NC_002947/2307723‑2308018 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |