New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2310206 =	40 (0.740)	3 (0.060)	3/238	NT	7.4%	intergenic (‑185/‑44)	PP_2032/PP_2033	ATPase/hypothetical protein
	?	NC_002947	2310277 =	39 (0.790)					coding (28/1311 nt)	PP_2033	hypothetical protein

GAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAAACAACCTGCACAATGCCACGGCG  >  NC_002947/2310058‑2310354                                                                                                                                                     |                                                                                                                                                      gAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCCCGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGc                                                                                                                                                       >  2:103144/1‑149 (MQ=255)    atgcaacagggccacattgctcaaggcgttgccatagctgccaaccattgtcaccctgctcaccctccgccgtggaattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcc                                                                                                                                                       <  1:239277‑M1/1‑1 (MQ=255)     atgcaacagggccacattgctcaaggcgttgccatagctgccacccttgtcaccctgctcaccctccgccgtggcattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcc                                                                                                                                                       >  2:239277‑M1/145‑145 (MQ=255)        caacagggccacattgctcaaggcgttgccatagctgccacccttgtcaccctgctcaccctccgccgtggcattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcCGTGCTg                                                                                                                                                 >  4:29007‑M1/142‑148 (MQ=255)            agggccacattgctcaaggcgttgccatagctgccacccttgtcaccctgctcaccctccgccgtggcattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcCGTGc                                                                                                                                                   <  3:113776‑M1/5‑1 (MQ=255)            agggccacattgctcaaggcgttgccatagctgccacccttgtcaccctgctcaccctccgccgtggcattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcCGTGc                                                                                                                                                   >  4:113776‑M1/138‑142 (MQ=255)                        ggATACTTTAATCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTC‑‑‑CGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑Cg                                                                                                                            >  6:330313/1‑149 (MQ=255)                              tttAATCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGa                                                                                                                          >  6:118336/1‑148 (MQ=255)                              tttAATCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGa                                                                                                                          >  5:348967/1‑148 (MQ=255)                              tttAATCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGa                                                                                                                          >  7:7785/1‑148 (MQ=255)                                  aTCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTg                                                                                                                                                 <  6:34784/122‑1 (MQ=255)                                  aTCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTg                                                                                                                                                 >  5:34784/1‑122 (MQ=255)                                       tCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGTGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAg                                                                                                                   <  6:348967/146‑1 (MQ=255)                                            gggggCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACg                                                                                                           <  5:118336/149‑1 (MQ=255)                                                   accaccAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGatgatg                                                                                                     >  4:159871/1‑148 (MQ=255)                                                       ccaATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACgatgat                                                                                                      <  3:11940/143‑1 (MQ=255)                                                       ccaATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACgatgat                                                                                                      >  4:11940/1‑143 (MQ=255)                                                       ccaATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAAt                                                                                                >  4:326192/1‑149 (MQ=255)                                                       ccaATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTC‑‑‑CGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGag                                                                                             <  5:330313/149‑1 (MQ=255)                                                        caATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGatgatg                                                                                                     >  3:304343/1‑143 (MQ=255)                                                        caATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGatgatg                                                                                                     <  4:304343/143‑1 (MQ=255)                                                        caATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAAt                                                                                                >  3:5696/1‑148 (MQ=255)                                                        caATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAAt                                                                                                >  7:156572/1‑148 (MQ=255)                                                                caccctccgccgtggcattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAgcgc                                                                                       >  5:153131‑M1/86‑149 (MQ=255)                                                                   cctccgccgtggcattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAg                                                                                    <  6:60062‑M1/67‑1 (MQ=255)                                                                       cgccgtggcattgtgcaggttgtttccggtgccatcgaagaacacgccaaaacgcagggtgaccggcgtaaggtttgcCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCAc                                                                                 >  5:60062‑M1/79‑148 (MQ=255)                                                                                  gCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTAc                                                                     >  1:13885/1‑149 (MQ=255)                                                                                   cAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACg                                                                    >  5:198332/1‑149 (MQ=255)                                                                                    aGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGc                                                                   >  7:57394/1‑149 (MQ=255)                                                                                      aCGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCg                                                                 <  6:198332/149‑1 (MQ=255)                                                                                          gCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAg                                                                                                                      >  6:135321/1‑92 (MQ=255)                                                                                               cGGCCAAAGAAATGTCCCACGCATGGCGGGCCTTTCCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTCCAGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACC                                                           <  1:103144‑M1/147‑1 (MQ=255)                                                                                                    aaaGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGttt                                                   >  4:291872/1‑149 (MQ=255)                                                                                                         attGTCCCTCGCATGTCTGGCCTTTGCCTGATGGTGCGTGACGGTGTGCTGTCGCCTGCTTTTGGTTTT‑CGGACAAGCAGGAGACACGATGATGAAATTGAGAAGCGCCAGCACGGCAAACGTTACGCCGTTCACCCTGCGTTTTGGc                                               <  8:7785/146‑1 (MQ=255)                                                                                                         aaTGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGc                                               <  4:5696/148‑1 (MQ=255)                                                                                                         aaTGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCATGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCg                                              >  6:313174/1‑149 (MQ=255)                                                                                                             tCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACgatgat                                                                                                      >  8:119673/1‑89 (MQ=255)                                                                                                             tCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACgatgat                                                                                                      <  7:119673/89‑1 (MQ=255)                                                                                                             tCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCgtgt                                           <  2:13885/148‑1 (MQ=255)                                                                                                             tCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGtt                                          <  3:291872/149‑1 (MQ=255)                                                                                                               ccACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGttct                                        >  7:16638/1‑149 (MQ=255)                                                                                                                   gCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGa                                    >  3:84895/1‑149 (MQ=255)                                                                                                                     aTGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATg                                  >  2:214879/1‑149 (MQ=255)                                                                                                                      tggctggcCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATgg                                 >  1:289119/1‑149 (MQ=255)                                                                                                                        gctggcCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCAGCGtttt                                                  >  6:208541/1‑130 (MQ=255)                                                                                                                                 tGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAaac                       >  6:194921/1‑148 (MQ=255)                                                                                                                                     tGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAAACAACCt                  >  4:153667/1‑149 (MQ=255)                                                                                                                                     tGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAAACAACCt                  >  8:258666/1‑149 (MQ=255)                                                                                                                                             cGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAAACAACCTGCACAAt           <  5:194921/148‑1 (MQ=255)                                                                                                                                              gTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAAACAACCTGCACAATGc         >  2:78481/1‑149 (MQ=255)                                                                                                                                                     CGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAAACAACCTGCACAATGCCAcggcg  >  2:289119‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATCCGGGGGGGCGACCACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTT‑CGGACAAGCAGGAGACACGATGATGAAAATGAGCAGCGCCAGCACGGCAAACCTTACGCCGGTCACCCTGCGTTTTGGCGTGTTCTTCGATGGCACCGGAAACAACCTGCACAATGCCACGGCG  >  NC_002947/2310058‑2310354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.