New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2359480 =	35 (0.650)	4 (0.080)	3/246	NT	10.2%	coding (438/924 nt)	PP_2074	LysR family transcriptional regulator
	?	NC_002947	2359529 =	37 (0.720)					coding (487/924 nt)	PP_2074	LysR family transcriptional regulator

CAGCAGGATGACCTTCCGCATCGGCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTG  >  NC_002947/2359333‑2359617                                                                                                                                                    |                                                                                                                                          gtcatcgaccacaccctgggtgttggcggttggcgaaacctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattgg                                                                                                                                          >  2:302186‑M1/148‑149 (MQ=255) caccagGATGACCTTCCGCATCGGCTTGTCCGCTCATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGCTGGAGGCGCCAAACGTGGAGGTGGTCGTGCAGCAAGTGGACTACTGGCGCATTCCCGACCTGCTggcgg                                                                                                                                          >  6:203137/4‑149 (MQ=255)  tcatcgaccacaccctgggtgttggcggttggcgaaacctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggc                                                                                                                                         >  5:143438‑M1/147‑149 (MQ=255)  agcagGATGACCTTCCGCATCGGCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTggcggc                                                                                                                                         >  5:257684/1‑149 (MQ=255)    atcgaccacaccctgggtgttggcggttggcgaaacctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggcgg                                                                                                                                       >  2:236035‑M1/145‑149 (MQ=255)         tGACCTTCCGCATCGGCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGAc                                                                                                                                  <  1:274501/149‑1 (MQ=255)          gACCTTCCGCATCGGCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACg                                                                                                                                 >  8:319711/1‑149 (MQ=255)                ccGCATCGGCTTGTCGGATGATGGCGCGTCGGGCCTGCTGCCGCCGCGGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGGGGTGGTGGGCGTGCCGCAGGGGGACTCCTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACg                                                                                                                            <  5:203137/148‑1 (MQ=255)                  gCATCGGCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTg                                                                                                                         >  3:258106/1‑149 (MQ=255)                   cATCGGCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTgg                                                                                                                        <  2:144741/149‑1 (MQ=255)                        gCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTAt                                                                                                                    >  3:216645/1‑148 (MQ=255)                         cTTGTCCGATGATTTCGAGTCGGTCCTGCTGCTGCCGCTGTTGAGTGGGCTGCGGTTGGAGGCGACAAAGGTGGTGGTGGTCTTTCATCATCTGGACTACTGGCGCATTCCGGACCTGCTTTCGTCGGGCTAAGTGACGGTGTGTAt                                                                                                                    <  6:276588/147‑1 (MQ=255)                         cTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCa                                                                                                                  <  5:63346/149‑1 (MQ=255)                                  cgaaacctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggcggg                                                                                                                                      >  1:49781‑M1/115‑120 (MQ=255)                                  cgaaacctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggcggg                                                                                                                                      <  2:49781‑M1/6‑1 (MQ=255)                                  cgaaacctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggc                                                                                                                                         <  4:148768‑M1/3‑1 (MQ=255)                                  cgaaacctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggc                                                                                                                                         >  3:148768‑M1/115‑117 (MQ=255)                                    atgTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAg                                                                                                       <  1:57541/149‑1 (MQ=255)                                     tgTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGcggcgg                                                                                                                                       <  8:239572/116‑1 (MQ=255)                                     tgTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGcggcgg                                                                                                                                       >  7:239572/1‑116 (MQ=255)                                      acctggacatgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAggg                                                                                                     <  7:63951‑M1/39‑1 (MQ=255)                                       tCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGcggcgg                                                                                                                                       >  6:180264/1‑114 (MQ=255)                                       tCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGcggcgg                                                                                                                                       <  5:180264/114‑1 (MQ=255)                                       tCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGc                                                                                                    <  4:258106/149‑1 (MQ=255)                                               tgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggc                                                                                                                                         >  1:197209‑M1/102‑104 (MQ=255)                                               tgcggacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattggc                                                                                                                                         <  2:197209‑M1/3‑1 (MQ=255)                                                   gacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                        >  8:63951‑M1/98‑149 (MQ=255)                                                   ccgcagcgccgcTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                        >  4:158608/7‑149 (MQ=255)                                                            cgcTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACg                                                                                >  1:306738/1‑148 (MQ=255)                                                             aaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                        >  2:91188‑M1/88‑139 (MQ=255)                                                             aaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                        <  1:91188‑M1/52‑1 (MQ=255)                                                                 ttGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAg                                                                            <  7:319711/147‑1 (MQ=255)                                                                 ttGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGt                                                                          >  3:219099/1‑149 (MQ=255)                                                                             cGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCATACCAAGGGCCTGCCCGCGAATGCCAAACGCAAGGTGCTACGCACCCt                                                              <  5:342871/149‑1 (MQ=255)                                                                             cGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCAccc                                                               <  6:257684/148‑1 (MQ=255)                                                                                 tGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCaa                                                          <  5:54161/149‑1 (MQ=255)                                                                                              cGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGc                                             >  3:155918/1‑149 (MQ=255)                                                                                                tggtggtggTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCgg                                           <  3:158608/149‑1 (MQ=255)                                                                                                       ggtCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGc                                                                               >  1:220038/1‑106 (MQ=255)                                                                                                       ggtCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGc                                                                               <  2:220038/106‑1 (MQ=255)                                                                                                              cagcaTGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCAGGCCGACAAGTCCa                              <  7:291845/148‑1 (MQ=255)                                                                                                                     tgGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCAcgccg                      >  1:74652/1‑149 (MQ=255)                                                                                                                            ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGt                                                  >  4:157752/1‑114 (MQ=255)                                                                                                                            ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGt                                                  <  3:157752/114‑1 (MQ=255)                                                                                                                            ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCttt                  >  2:257837/1‑146 (MQ=255)                                                                                                                            ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCttt                  <  1:257837/146‑1 (MQ=255)                                                                                                                            ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTc                 <  4:155918/147‑1 (MQ=255)                                                                                                                               gcgcATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTg             >  4:107383/1‑148 (MQ=255)                                                                                                                                     tCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTa                                                 <  5:221601/106‑1 (MQ=255)                                                                                                                                     tCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTa                                                 >  6:221601/1‑106 (MQ=255)                                                                                                                                       cGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGa           >  7:156055/1‑142 (MQ=255)                                                                                                                                       cGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGa           <  8:156055/142‑1 (MQ=255)                                                                                                                                       cGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGttt    >  3:184890/1‑149 (MQ=255)                                                                                                                                         gACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTg  <  4:216645/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                          CAGCAGGATGACCTTCCGCATCGGCTTGTCCGATGATGTCGAGTCGGGCCTGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTG  >  NC_002947/2359333‑2359617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.