New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2359480 =	35 (0.650)	4 (0.080)	3/246	NT	10.2%	coding (438/924 nt)	PP_2074	LysR family transcriptional regulator
	?	NC_002947	2359529 =	37 (0.720)					coding (487/924 nt)	PP_2074	LysR family transcriptional regulator

TGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGAC  >  NC_002947/2359383‑2359675                                                                                                                                                   |                                                                                                                                                    gacgttggcaaaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                                                                                   >  8:63951‑M1/98‑149 (MQ=255) ccgcagcgccgcTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                                                                                   >  4:158608/7‑149 (MQ=255)          cgcTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACg                                                                                                                                           >  1:306738/1‑148 (MQ=255)           aaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                                                                                   >  2:91188‑M1/88‑139 (MQ=255)           aaactcatccagtgaaagcggcgtgctggacttgtcggcccgcactaccctggcttgcagggtgcgtagcaccttgcgtttggcattGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAAt                                                                                                                                                   <  1:91188‑M1/52‑1 (MQ=255)               ttGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAg                                                                                                                                       <  7:319711/147‑1 (MQ=255)               ttGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGt                                                                                                                                     >  3:219099/1‑149 (MQ=255)                           cGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCATACCAAGGGCCTGCCCGCGAATGCCAAACGCAAGGTGCTACGCACCCt                                                                                                                         <  5:342871/149‑1 (MQ=255)                           cGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCAccc                                                                                                                          <  6:257684/148‑1 (MQ=255)                               tGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCaa                                                                                                                     <  5:54161/149‑1 (MQ=255)                                            cGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGc                                                                                                        >  3:155918/1‑149 (MQ=255)                                              tggtggtggTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCgg                                                                                                      <  3:158608/149‑1 (MQ=255)                                                     ggtCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGc                                                                                                                                          <  2:220038/106‑1 (MQ=255)                                                     ggtCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGc                                                                                                                                          >  1:220038/1‑106 (MQ=255)                                                            cagcaTGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCAGGCCGACAAGTCCa                                                                                         <  7:291845/148‑1 (MQ=255)                                                                   tgGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCAcgccg                                                                                 >  1:74652/1‑149 (MQ=255)                                                                          ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGt                                                                                                             >  4:157752/1‑114 (MQ=255)                                                                          ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGt                                                                                                             <  3:157752/114‑1 (MQ=255)                                                                          ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCttt                                                                             >  2:257837/1‑146 (MQ=255)                                                                          ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCttt                                                                             <  1:257837/146‑1 (MQ=255)                                                                          ctGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTc                                                                            <  4:155918/147‑1 (MQ=255)                                                                             gcgcATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTg                                                                        >  4:107383/1‑148 (MQ=255)                                                                                   tCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTa                                                                                                            >  6:221601/1‑106 (MQ=255)                                                                                   tCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTa                                                                                                            <  5:221601/106‑1 (MQ=255)                                                                                     cGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGa                                                                      >  7:156055/1‑142 (MQ=255)                                                                                     cGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGa                                                                      <  8:156055/142‑1 (MQ=255)                                                                                     cGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGtt‑t                                                              >  3:184890/1‑149 (MQ=255)                                                                                       gACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTg                                                            <  4:216645/149‑1 (MQ=255)                                                                                               attggcgggcaggcccttggtctggctgatacccaccgtcacgtcgcccgccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGtt‑t                                                              <  1:91188‑M2/87‑1 (MQ=255)                                                                                               attggcgggcaggcccttggtctggctgatacccaccgtcacgtcgcccgccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGtt‑t                                                              >  2:91188‑M2/53‑139 (MQ=255)                                                                                               attggcgggcaggcccttggtctggctgatacccaccgtcacgtcgcccgccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTc                                                    >  8:63951‑M2/53‑149 (MQ=255)                                                                                                  ggagggcgACGTGACCGTAGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCg                                                  >  8:118737/4‑148 (MQ=255)                                                                                                            cccttggtctggctgatacccaccgtcacgtcgcccgccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGt                                       <  7:63951‑M2/110‑1 (MQ=255)                                                                                                               aCGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGttt                                     <  7:118737/148‑1 (MQ=255)                                                                                                                  gTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcgc                                  >  3:295516/1‑148 (MQ=255)                                                                                                                  gTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcgc                                  >  1:138733/1‑148 (MQ=255)                                                                                                                     ggTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcgccaac                              >  2:85334/1‑149 (MQ=255)                                                                                                                     ggTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcgccaa                               <  3:107383/148‑1 (MQ=255)                                                                                                                         tCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcgccaaccgcc                          <  4:169668/149‑1 (MQ=255)                                                                                                                         tCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcgccaaccgc                           >  7:122840/1‑148 (MQ=255)                                                                                                                              cAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAacac                     <  4:184890/149‑1 (MQ=255)                                                                                                                                  ccAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCGGCATGTCCAGGTTTCGCCAACCGCCAACACCCAg                 >  4:29809/1‑149 (MQ=255)                                                                                                                                     aGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGGCCGCATGTCCAGGGTTCGCCCACCGCCAACACCCAgggg              >  8:57479/1‑148 (MQ=255)                                                                                                                                     aGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGGAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGgt              <  7:57479/149‑1 (MQ=255)                                                                                                                                      gggCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGgtg             <  4:295516/149‑1 (MQ=255)                                                                                                                                        gCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTATTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGgtgt            <  1:85334/149‑1 (MQ=255)                                                                                                                                          cTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGt         >  5:309873/1‑149 (MQ=255)                                                                                                                                             cccgccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcg                                   <  2:49781‑M2/114‑1 (MQ=255)                                                                                                                                             cccgccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcg                                   >  1:49781‑M2/7‑120 (MQ=255)                                                                                                                                              ccgccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGAt     >  2:236035‑M2/6‑149 (MQ=255)                                                                                                                                                gccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCa                                                >  1:197209‑M2/4‑104 (MQ=255)                                                                                                                                                gccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCa                                                <  2:197209‑M2/101‑1 (MQ=255)                                                                                                                                                gccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcg                                   <  4:148768‑M2/114‑1 (MQ=255)                                                                                                                                                gccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTcg                                   >  3:148768‑M2/4‑117 (MQ=255)                                                                                                                                                gccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGa   >  5:143438‑M2/4‑149 (MQ=255)                                                                                                                                                 ccAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGAc  >  2:302186‑M2/3‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGCTGCCGCCGCTGTTGCGGGCGCTGCGGGTGGAGGCGCCAAACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTT‑TTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGAC  >  NC_002947/2359383‑2359675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.