New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2707265	40 (0.740)	4 (0.080)	3/246	NT	8.6%	coding (308/495 nt)	PP_2370	hypothetical protein
	?	NC_002947	= 2707336	47 (0.920)					coding (237/495 nt)	PP_2370	hypothetical protein

CCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACC  >  NC_002947/2707119‑2707410                                                                                                                                                   |                                                                                                                                                  ccTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCtt                                                                                                                                                  >  2:207712/1‑148 (MQ=255)     gTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGaa                                                                                                                                               <  7:294665/147‑1 (MQ=255)        ggTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTg                                                                                                                                           >  1:37672/1‑148 (MQ=255)         gTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCtt                                                                                                                                                  >  5:216581/1‑140 (MQ=255)         gTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCtt                                                                                                                                                  <  6:216581/140‑1 (MQ=255)             ccGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCACAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGaa                                                                                                                                               >  2:266949/1‑139 (MQ=255)             ccGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCACAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGaa                                                                                                                                               >  2:262593/1‑139 (MQ=255)             ccGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCACAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGaa                                                                                                                                               <  1:262593/139‑1 (MQ=255)             ccGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCACAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGaa                                                                                                                                               <  1:266949/139‑1 (MQ=255)                   aGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACgc                                                                                                                               <  2:37672/149‑1 (MQ=255)                       cTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACgcag                                                                                                                             >  1:223060/1‑147 (MQ=255)                       cTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACgcag                                                                                                                             >  5:119350/1‑147 (MQ=255)                         tCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGa                                                                                                                         >  6:274187/1‑149 (MQ=255)                          cAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGa                                                                                                                         <  2:89941/148‑1 (MQ=255)                              cTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACgcgc                                                                                                                    <  1:165537/149‑1 (MQ=255)                               tttGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAAc                                                                                                                                              <  4:305518/122‑1 (MQ=255)                               tttGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAAc                                                                                                                                              >  3:305518/1‑122 (MQ=255)                                   cAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTgg                                                                                                               <  7:214199/149‑1 (MQ=255)                                    aGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGa                                                                                                              <  5:274187/149‑1 (MQ=255)                                    aGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGa                                                                                                              <  1:207712/149‑1 (MQ=255)                                     gcgcGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAg                                                                                                             >  6:126542/1‑149 (MQ=255)                                            ttCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGc                                                                                                      >  4:69023/1‑149 (MQ=255)                                                gggTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTgaacttcccggcattcaccgacggccgcagctactccaatgcgcgtctg                                                                                                  >  2:301974‑M1/1‑100 (MQ=255)                                                      ttGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGAAGCACATCGCCGATGGCGCGCAGTTCGACCTTGAACATGAAGCGGTCACGCAGCAGCCGCGCATTGGAGTATATGCGGCCGTCGGt                                                                                            >  8:193952/1‑149 (MQ=255)                                                           ggCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATg                                                                                       >  5:136681/1‑149 (MQ=255)                                                                ggATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCgg                                                                                   >  8:232485/1‑148 (MQ=255)                                                                    ggCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTgaacttcccggcattcaccgacggccgcagctactccaatgcgcgtctgctgcgtgaccgctacaagtt                                                                              >  6:91401‑M1/1‑80 (MQ=255)                                                                     gCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGtt                                                                             >  6:54209/1‑149 (MQ=255)                                                                          tGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTgaacttcccggcattcaccgacggccgcagctactccaatgcgcgtctgctgcgtgaccgctacaagttcaaggg                                                                        <  1:301974‑M1/149‑76 (MQ=255)                                                                          tGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTgaacttcccggcattcaccgacggccgcagctactccaatgcgcgtctgctgcgtgaccgctacaagttcaaggg                                                                        <  5:91401‑M1/149‑76 (MQ=255)                                                                                gAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGt                                                                                            >  4:306759/1‑123 (MQ=255)                                                                                gAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGt                                                                                            <  3:306759/123‑1 (MQ=255)                                                                                    ccGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTg                                                              <  7:193952/149‑1 (MQ=255)                                                                                              ccATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGc                                                    <  2:52462/149‑1 (MQ=255)                                                                                                aTGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCAc                                                  <  7:232485/149‑1 (MQ=255)                                                                                                   aagaaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCg                                                                                    <  5:145407/112‑1 (MQ=255)                                                                                                   aagaaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCg                                                                                    >  6:145407/1‑112 (MQ=255)                                                                                                     gaaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCtt                                             <  6:119350/149‑1 (MQ=255)                                                                                                     gaaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCtt                                             <  2:223060/149‑1 (MQ=255)                                                                                                      aaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCtt                                             >  5:151478/1‑148 (MQ=255)                                                                                                           cTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAAt                                                                                        >  1:191967/1‑100 (MQ=255)                                                                                                           cTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAAt                                                                                        <  2:191967/100‑1 (MQ=255)                                                                                                           cTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGa                                       >  6:334944/1‑149 (MQ=255)                                                                                                             ggTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAgtg                                                        <  6:53768/130‑1 (MQ=255)                                                                                                                   gcagcaCATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCa                                           >  5:267320/1‑137 (MQ=255)                                                                                                                   gcagcaCATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCa                                           <  6:267320/137‑1 (MQ=255)                                                                                                                             gCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTgg                      <  6:136681/148‑1 (MQ=255)                                                                                                                              ccGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTg                                                              >  1:21537/1‑107 (MQ=255)                                                                                                                              ccGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTc                    >  1:312161/1‑149 (MQ=255)                                                                                                                              ccGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTAACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTg                                                              <  2:21537/107‑1 (MQ=255)                                                                                                                                      gcgcAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATg                                                                                       >  2:138737/1‑74 (MQ=255)                                                                                                                                        gcAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGc          >  2:158429/1‑149 (MQ=255)                                                                                                                                           gTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAACCAt       <  5:54209/149‑1 (MQ=255)                                                                                                                                            ttCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATa      >  1:13320/1‑149 (MQ=255)                                                                                                                                               gCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATacac   >  3:86651/1‑149 (MQ=255)                                                                                                                                                cccTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCagggcgaactgcgcgccatcggcgatgtgctgcgcgaccagctgttcttcatggcccgctgcggcttcgacgca  <  1:301974‑M2/149‑75 (MQ=255)                                                                                                                                                cccTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCagggcgaactgcgcgccatcggcgatgtgctgcgcgaccagctgttcttcatggcccgctgcggcttcgacgca  <  5:91401‑M2/149‑75 (MQ=255)                                                                                                                                                  cTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACAcc  >  7:78149/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCGTCGAAGCCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACC  >  NC_002947/2707119‑2707410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.