New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2707265	40 (0.740)	4 (0.080)	3/246	NT	8.6%	coding (308/495 nt)	PP_2370	hypothetical protein
	?	NC_002947	= 2707336	47 (0.920)					coding (237/495 nt)	PP_2370	hypothetical protein

CCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCACGATGTAGTCGTCG  >  NC_002947/2707202‑2707483                                                                                                                                        |                                                                                                                                                    ccGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTg                                                                                                                                       <  7:193952/149‑1 (MQ=255)           ccATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGc                                                                                                                             <  2:52462/149‑1 (MQ=255)             aTGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCAc                                                                                                                           <  7:232485/149‑1 (MQ=255)                  gaaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCtt                                                                                                                      <  6:119350/149‑1 (MQ=255)                  gaaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCtt                                                                                                                      <  2:223060/149‑1 (MQ=255)                   aaCAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCtt                                                                                                                      >  5:151478/1‑148 (MQ=255)                        cTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGa                                                                                                                >  6:334944/1‑149 (MQ=255)                          ggTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAgtg                                                                                                                                 <  6:53768/130‑1 (MQ=255)                                gcagcaCATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCa                                                                                                                    >  5:267320/1‑137 (MQ=255)                                gcagcaCATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCa                                                                                                                    <  6:267320/137‑1 (MQ=255)                                          gCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTgg                                                                                               <  6:136681/148‑1 (MQ=255)                                           ccGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTg                                                                                                                                       >  1:21537/1‑107 (MQ=255)                                           ccGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTc                                                                                             >  1:312161/1‑149 (MQ=255)                                           ccGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTAACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTg                                                                                                                                       <  2:21537/107‑1 (MQ=255)                                                     gcAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGc                                                                                   >  2:158429/1‑149 (MQ=255)                                                        gTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAACCAt                                                                                <  5:54209/149‑1 (MQ=255)                                                         ttCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATa                                                                               >  1:13320/1‑149 (MQ=255)                                                            gCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATacac                                                                            >  3:86651/1‑149 (MQ=255)                                                             cccTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCagggcgaactgcgcgccatcggcgatgtgctgcgcgaccagctgttcttcatggcccgctgcggcttcgacgca                                                                           <  1:301974‑M2/149‑75 (MQ=255)                                                             cccTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCagggcgaactgcgcgccatcggcgatgtgctgcgcgaccagctgttcttcatggcccgctgcggcttcgacgca                                                                           <  5:91401‑M2/149‑75 (MQ=255)                                                               cTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACAcc                                                                           >  7:78149/1‑147 (MQ=255)                                                                  gAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGCTGGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACACAgg                                                                       >  1:244820/1‑149 (MQ=255)                                                                   aaCTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCagggcgaactgcgcgccatcggcgatgtgctgcgcgaccagctgttcttcatggcccgctgcggcttcgacgcattcgcc                                                                     >  6:91401‑M2/1‑69 (MQ=255)                                                                    agttGTAGCGTTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGTATGCCGGGAATTTCAGCGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTGCGGTTCGTGGTCGCTGTCCAGCCATACACCCAGgcc                                                                     <  1:112103/146‑1 (MQ=255)                                                                    aCTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGCTCGCTCTCCAGCCATACACCCACgcc                                                                     >  2:112103/1‑148 (MQ=255)                                                                        gTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCAt                                                                >  7:245760/1‑149 (MQ=255)                                                                        gTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAAAGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCAt                                                                >  1:259455/1‑149 (MQ=255)                                                                             ggTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCgg                                                           <  8:78149/149‑1 (MQ=255)                                                                               tCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGc                                                         <  1:158429/149‑1 (MQ=255)                                                                                  cGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCtt                                                      <  2:312161/149‑1 (MQ=255)                                                                                   gcagcaGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCtt                                                      >  5:23687/1‑148 (MQ=255)                                                                                     agcagACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGAACTGGATGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAg                                                   >  2:316916/1‑149 (MQ=255)                                                                                       cagACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCagggcgaactgcgcgccatcggcgatgtgctgcgcgaccagctgttcttcatggcccgctgcggcttcgacgcattcgccatccgtgccgacaaggaccc                                                 >  2:301974‑M2/1‑49 (MQ=255)                                                                                         gACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACg                                               <  6:23687/149‑1 (MQ=255)                                                                                         gACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACg                                               >  7:133098/1‑149 (MQ=255)                                                                                          aCGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGt                                              >  5:293369/1‑149 (MQ=255)                                                                                            gcgcATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTgg                                            >  7:259627/1‑149 (MQ=255)                                                                                            gcgcATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCAGACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTgg                                            >  5:331905/1‑149 (MQ=255)                                                                                            gcgcATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCGGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTgg                                            <  2:244820/149‑1 (MQ=255)                                                                                                 ttGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATg                                       >  3:291150/1‑149 (MQ=255)                                                                                                    gAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTc                                    <  4:291150/149‑1 (MQ=255)                                                                                                         gCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCgcgc                                <  8:259627/148‑1 (MQ=255)                                                                                                             c‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCcac                             <  6:293369/147‑1 (MQ=255)                                                                                                             c‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACAt                           <  8:245760/149‑1 (MQ=255)                                                                                                                  cGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTg                        >  6:245674/1‑148 (MQ=255)                                                                                                                          aaTGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCa                <  3:69023/148‑1 (MQ=255)                                                                                                                            tGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCACGa             <  2:259455/149‑1 (MQ=255)                                                                                                                             gCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCACGAt            >  4:28440/1‑149 (MQ=255)                                                                                                                               cGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTcgc                                  >  7:271866/1‑125 (MQ=255)                                                                                                                               cGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTcgc                                  <  8:271866/125‑1 (MQ=255)                                                                                                                                  gAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCACGATGTAgt       <  5:334944/149‑1 (MQ=255)                                                                                                                                     gTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCACGATGTAgtcgt    <  6:331905/149‑1 (MQ=255)                                                                                                                                        cAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCACGATGTAGtcgtcg  >  6:63655/1‑148 (MQ=255)                                                                                                                                        |                                                                                                                                                    CCGCAGCGGGCCATGAAGAACAGCTGGTCGCGCAGCACATCGCCGATGGCGCGCAGTTCGCCCTTGAACTTGTAGCGGTCACGCAGCAGACGCGCATTGGAGTAGCTGC‑GGCCGTCGGTGAATGCCGGGAAGTTCAGGGCGATGACCTGGAAGTGGTGCACGTCTTCACCGATTTCCTCCGCTTCCTGGTCGCTGTCCAGCCATACACCCAGGCCGCCATCGCGGGCCTTGAGCACGTGGGCATGGTCGCGCCACATTTGCAGCGGCACGATGTAGTCGTCG  >  NC_002947/2707202‑2707483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.