New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2986678 =	32 (0.590)	5 (0.100)	3/242	NT	13.4%	coding (1721/2991 nt)	PP_2612	membrane protein
	?	NC_002947	2986778 =	35 (0.700)					coding (1621/2991 nt)	PP_2612	membrane protein

AGTTGGGTTTCGCACGCGCAGTGGTGGTCAGCTCGATGGACACTGTGCGGCTACCCGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACG  >  NC_002947/2986535‑2986824                                                                                                                                                |                                                                                                                                                   cttgttcggcgccagcgacaacgtgatcgaagggctcgccggtcgcttcccggccatggcggatatcaccgacctcaccgcccagtcggtcaataccgtggtgctcaagcgactgcgcgggcagacccgatgggatgccagccATGGcc                                                                                                                                               <  3:243482‑M1/6‑1 (MQ=255)                            tCAGCTCGATGGACACTGTGCGGCTACCCGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCgccgcc                                                                                                                    <  3:261776/149‑1 (MQ=32)                                  cGATGGACACTGTGCGGCTACCCGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGcgcc                                                                                                                       >  1:191475/1‑140 (MQ=32)                                  cGATGGACACTGTGCGGCTACCCGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGcgcc                                                                                                                       <  2:191475/140‑1 (MQ=32)                                        acacTGTGCGGCTACCCGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAgc                                                                                                        >  6:122208/1‑149 (MQ=35)                                                    tACCCGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCa                                                                                            >  3:149861/1‑149 (MQ=37)                                                        cGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCg                                                                                        >  4:323914/1‑149 (MQ=38)                                                                gcAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCcgc                                                                                >  2:160168/1‑149 (MQ=255)                                                                 atcaccgacctcaccgcccagtcggtcaataccgtggtgctcaagcgactgcgcgggcagacccgatgggatgccagccATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCcgcg                                                                               <  6:329291‑M1/70‑1 (MQ=255)                                                                  aaCGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCgcgc                                                                              >  8:145890/1‑149 (MQ=255)                                                                  aaCGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCgcgc                                                                              >  5:23402/1‑149 (MQ=255)                                                                       tttCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTccc                                                                                  <  1:247112/140‑1 (MQ=255)                                                                       tttCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTccc                                                                                  >  2:247112/1‑140 (MQ=255)                                                                       tttCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGcc                                                                          >  4:283385/1‑148 (MQ=255)                                                                           aTCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACt                                                                      <  6:23402/148‑1 (MQ=255)                                                                              tctTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAg                                                                                                                  >  1:15218/1‑101 (MQ=32)                                                                              tctTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAg                                                                                                                  <  2:15218/101‑1 (MQ=32)                                                                              tctTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCAc                                                                  >  2:158744/1‑149 (MQ=255)                                                                                ttCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCCGTGATTCGATAGCGCGCCGCCAGCAACACCAGCGCTTTCTCGACATACGCCTCACGCGCTGCCAACTGCACCt                                                                >  1:203697/1‑149 (MQ=11)                                                                                            aataccgtggtgctcaagcgactgcgcgggcagacccgatgggatgccagccATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGc                                                    >  5:329291‑M1/53‑149 (MQ=255)                                                                                              taccgtggtgcgcaagcgactgcgcgggcagacccgatgggatgccagccATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCa                                                  >  3:185375‑M1/51‑149 (MQ=255)                                                                                                      ttCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCACAGGCCAtggct                                             >  6:51649/1‑146 (MQ=255)                                                                                                      ttCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCACAGGCCAtggct                                             <  5:51649/146‑1 (MQ=255)                                                                                                       gctcaagcgcctgcgcgggcagacccgatgggatgccagtcATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAATCCCAGGGCTTTCTCGGCATTAGCCTCACGCGCTGCCAACTGCACCTGTCGCCGCAGGCCATGACTGGCa                                         <  5:262721‑M1/108‑1 (MQ=255)                                                                                                        ctcaagcgcctgcgcgggcagacccgatgggatgccagtcATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAATCCCAGGGCTTTCTCGGCATTAGCCTCACGCGCTGCCAACTGCACCTGTCGCCGCAGGCCATGACTGGCAt                                        >  6:262721‑M1/41‑149 (MQ=255)                                                                                                        cAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCa                                         <  3:283385/148‑1 (MQ=255)                                                                                                           aTACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAgg                                                     <  3:69928/133‑1 (MQ=255)                                                                                                           aTACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAgg                                                     >  4:69928/1‑133 (MQ=255)                                                                                                           aTACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATcc                                      >  3:88925/1‑148 (MQ=255)                                                                                                               cGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCg                                 <  4:149861/149‑1 (MQ=255)                                                                                                                 cTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCAtggct                                             <  7:15183/135‑1 (MQ=255)                                                                                                                 cTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCAtggct                                             >  8:15183/1‑135 (MQ=255)                                                                                                                    cACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCGGGTCt                            <  7:145890/149‑1 (MQ=255)                                                                                                                          ctGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCGGGTCTGCCcgc                      >  5:124226/1‑149 (MQ=255)                                                                                                                               tAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCTCCTCCCGCGCTGCCAACTGCAc                                                                  <  6:14754/100‑1 (MQ=255)                                                                                                                               tAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCAc                                                                  >  5:9833/1‑100 (MQ=255)                                                                                                                               tAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCAc                                                                  >  5:14754/1‑100 (MQ=255)                                                                                                                               tAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCAc                                                                  <  6:9833/100‑1 (MQ=255)                                                                                                                                             gTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGcaccac   >  4:270888/1‑149 (MQ=255)                                                                                                                                              tAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACg  <  1:158744/149‑1 (MQ=255)                                                                                                                                              tAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACg  >  1:127192/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                   AGTTGGGTTTCGCACGCGCAGTGGTGGTCAGCTCGATGGACACTGTGCGGCTACCCGAGATGCGCAACGCTTTCATCTCTTCAACCTGCGCCATGCCGCTCTTCAAATACCGCTGCACCTCCTGGCTAAAGGGATTTTCCGTAATGGCCTGCTCGGTGATTCGATAGCGCGCCGCCAGCAACCCCAGCGCTTTCTCGGCATTCGCCTCCCGCGCTGCCAACTGCACCTGCCGCCGCAGGCCATGGCTGGCATCCCATCGGGTCTGCCCGCGCAGTCGCTTGAGCACCACG  >  NC_002947/2986535‑2986824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.