New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3013870	28 (0.520)	3 (0.060)	3/246	NT	8.8%	coding (402/2610 nt)	bcsA	cellulose synthase and translocator subunit
	?	NC_002947	= 3013900	36 (0.700)					coding (432/2610 nt)	bcsA	cellulose synthase and translocator subunit

GTACAGCAAGGCCTGGCCGCCGCGCATTGGGCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTG  >  NC_002947/3013725‑3014017                                                                                                                                                  |                                                                                                                                                     gTACAGCAAGGCCTGGCCGCCGCGCATTGGGCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACAcc                                                                                                                                                     >  8:232817/1‑147 (MQ=255) gTACAGCAAGGCCTGGCCGCCGCGCATTGGGCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACAcc                                                                                                                                                     <  7:232817/147‑1 (MQ=255) gTACAGCAAGGCCTGGCCGCCGCGCATTGGGCGCGGGGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAg                                                                                                                                                   <  3:251580/149‑1 (MQ=255)           gCCTGGCCGCCGCGCATTGGGCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑c                                                                                                                                        >  7:96808/1‑149 (MQ=255)             cTGGCCGCCGCGCATTGGGCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGc                                                                                                                                      <  8:194562/149‑1 (MQ=255)                               gcgcGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtg                                                                                                                    <  1:226311‑M2/149‑4 (MQ=255)                                cgcgGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgt                                                                                                                   <  3:559‑M2/149‑5 (MQ=255)                                  cgGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgttt                                                                                                                 >  3:194790‑M2/1‑143 (MQ=255)                                     tGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGcc                                                                                                              <  2:226311/149‑1 (MQ=255)                                      gcgcATGCACCTGCGGGCGGCAGGCGGGGTGGTGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACgctcaggccgcgcaggcgtgccgaggcctggtgtttgaaa                                                                                                              <  7:181648‑M1/149‑41 (MQ=255)                                                cTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACgctcaggccgcgcaggcgtgccgaggcctggtgt                                                                                                                    >  5:38517‑M1/1‑99 (MQ=255)                                                cTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACgctcaggccgcgcaggcgtgccgaggcctggtgt                                                                                                                    <  6:38517‑M1/133‑35 (MQ=255)                                                     ggcggcAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCtata                                                                                              <  3:80043/149‑1 (MQ=255)                                                       cggcAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGc                                                                                            <  1:164370/149‑1 (MQ=255)                                                             gCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCC‑CGCCTGCGCGGGCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCt                                                                                       >  8:138443/1‑148 (MQ=255)                                                                 ggTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACgg                                                                                  >  8:266823/1‑149 (MQ=255)                                                                       gcgcCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCg                                                                            <  7:266823/149‑1 (MQ=255)                                                                       gcgcCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCg                                                                            >  1:155237/1‑149 (MQ=255)                                                                           cACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCt                                                                        <  4:559/149‑1 (MQ=255)                                                                             cTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCt                                                                        >  2:6616/1‑147 (MQ=255)                                                                                                   gCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGAc                                                >  3:227106/1‑149 (MQ=255)                                                                                                     aTTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                     >  2:258976/1‑142 (MQ=255)                                                                                                     aTTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                     <  1:258976/142‑1 (MQ=255)                                                                                                             aGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTc                                      <  8:96808/149‑1 (MQ=255)                                                                                                                   ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGTCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCAGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACAGCACCGTTCGGCTa                                 >  7:285793/1‑148 (MQ=255)                                                                                                                   ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCctgct                                                         <  6:177863/124‑1 (MQ=255)                                                                                                                   ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCctgct                                                         >  5:177863/1‑124 (MQ=255)                                                                                                                   ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTAc                                >  1:137524/1‑149 (MQ=255)                                                                                                                    cgcgcgCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTAcc                               >  6:96761/1‑149 (MQ=255)                                                                                                                    cgcgcgCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTAcc                               >  2:86121/1‑149 (MQ=255)                                                                                                                     gcgcgcTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCAGCGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                     >  1:239708/1‑127 (MQ=255)                                                                                                                     gcgcgcTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCTTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                     <  2:239708/126‑1 (MQ=255)                                                                                                                           tACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                     <  8:30822/120‑1 (MQ=255)                                                                                                                           tACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                     >  7:30822/1‑120 (MQ=255)                                                                                                                                      tGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCa             >  3:145353/1‑149 (MQ=255)                                                                                                                                         tttCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcaccaccccgcctgccgcccgcaggtgcatgcgc          <  7:181648‑M2/149‑110 (MQ=255)                                                                                                                                          ttCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATctg         >  4:316898/1‑149 (MQ=255)                                                                                                                                             aaaCACgctcaggccgcgcaggcgtgccgaggcctggtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcgccaccccgcctgccgcccgcaggtgcatgcgcaccg       >  3:194790‑M1/1‑6 (MQ=255)                                                                                                                                             aaaCACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATctgcct      >  4:65648/1‑149 (MQ=255)                                                                                                                                               acacgctcaggccgcgcaggcgtgccgaggcctggtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcgccaccccgcctgccgcccgcaggtgcatgcgcaccgcg     <  3:559‑M1/149‑146 (MQ=255)                                                                                                                                               acacCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcgccaccccgcctgccgcccgcag                    <  6:38517‑M2/133‑100 (MQ=255)                                                                                                                                               acacCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcgccaccccgcctgccgcccgcag                    >  5:38517‑M2/1‑34 (MQ=255)                                                                                                                                                cacgctcaggccgcgcaggcgtgccgaggcctggtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcgccaccccgcctgccgcccgcaggtgcatgcgcaccgcgc    <  1:226311‑M1/149‑147 (MQ=255)                                                                                                                                                 acCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACATGGCGCAGCTGATGTTCATCTGCctgctg  >  7:225815/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GTACAGCAAGGCCTGGCCGCCGCGCATTGGGCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTG  >  NC_002947/3013725‑3014017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.