New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3013870	28 (0.520)	3 (0.060)	3/246	NT	8.8%	coding (402/2610 nt)	bcsA	cellulose synthase and translocator subunit
	?	NC_002947	= 3013900	36 (0.700)					coding (432/2610 nt)	bcsA	cellulose synthase and translocator subunit

GCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTGGTCATCGCCTTGCTGGTGCGACACAT  >  NC_002947/3013755‑3014046                                                                                                                                                   |                                                                                                                                                   gcgcGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtg                                                                                                                                                 <  1:226311‑M2/149‑4 (MQ=255)  cgcgGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgt                                                                                                                                                <  3:559‑M2/149‑5 (MQ=255)    cgGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgttt                                                                                                                                              >  3:194790‑M2/1‑143 (MQ=255)       tGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGcc                                                                                                                                           <  2:226311/149‑1 (MQ=255)                       ggcggcAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCtata                                                                                                                           <  3:80043/149‑1 (MQ=255)                         cggcAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGc                                                                                                                         <  1:164370/149‑1 (MQ=255)                               gCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCC‑CGCCTGCGCGGGCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCt                                                                                                                    >  8:138443/1‑148 (MQ=255)                                   ggTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACgg                                                                                                               >  8:266823/1‑149 (MQ=255)                                         gcgcCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCg                                                                                                         >  1:155237/1‑149 (MQ=255)                                         gcgcCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCg                                                                                                         <  7:266823/149‑1 (MQ=255)                                             cACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCt                                                                                                     <  4:559/149‑1 (MQ=255)                                               cTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCt                                                                                                     >  2:6616/1‑147 (MQ=255)                                                                     gCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGAc                                                                             >  3:227106/1‑149 (MQ=255)                                                                       aTTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                                                  >  2:258976/1‑142 (MQ=255)                                                                       aTTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                                                  <  1:258976/142‑1 (MQ=255)                                                                               aGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTc                                                                   <  8:96808/149‑1 (MQ=255)                                                                                     ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGTCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCAGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACAGCACCGTTCGGCTa                                                              >  7:285793/1‑148 (MQ=255)                                                                                     ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCctgct                                                                                      <  6:177863/124‑1 (MQ=255)                                                                                     ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCctgct                                                                                      >  5:177863/1‑124 (MQ=255)                                                                                     ccGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTAc                                                             >  1:137524/1‑149 (MQ=255)                                                                                      cgcgcgCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTAcc                                                            >  2:86121/1‑149 (MQ=255)                                                                                      cgcgcgCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTAcc                                                            >  6:96761/1‑149 (MQ=255)                                                                                       gcgcgcTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCAGCGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                                                  >  1:239708/1‑127 (MQ=255)                                                                                       gcgcgcTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCTTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                                                  <  2:239708/126‑1 (MQ=255)                                                                                             tACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                                                  <  8:30822/120‑1 (MQ=255)                                                                                             tACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGc                                                                                  >  7:30822/1‑120 (MQ=255)                                                                                                        tGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCa                                          >  3:145353/1‑149 (MQ=255)                                                                                                           tttCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcaccaccccgcctgccgcccgcaggtgcatgcgc                                       <  7:181648‑M2/149‑110 (MQ=255)                                                                                                            ttCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATctg                                      >  4:316898/1‑149 (MQ=255)                                                                                                               aaaCACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATctgcct                                   >  4:65648/1‑149 (MQ=255)                                                                                                                 acacCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcgccaccccgcctgccgcccgcag                                                 <  6:38517‑M2/133‑100 (MQ=255)                                                                                                                 acacCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCgtgtttgaaagcactggcgcggtagcgcgcgggtacctgttgcaatgcatcgatcagcaggccgcggtagtggcgcgccaccccgcctgccgcccgcag                                                 >  5:38517‑M2/1‑34 (MQ=255)                                                                                                                   acCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACATGGCGCAGCTGATGTTCATCTGCctgctg                               >  7:225815/1‑149 (MQ=255)                                                                                                                     cAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCctgctgct                             >  7:45425/1‑149 (MQ=255)                                                                                                                       ggCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTgg                           >  8:49719/1‑149 (MQ=255)                                                                                                                       ggCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTGCTATAGCGTGCTGACGCTATTCGCCCTCACCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTgg                           <  8:285793/149‑1 (MQ=255)                                                                                                                                        cgcgGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTc                                           <  3:296523/117‑1 (MQ=255)                                                                                                                                        cgcgGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTc                                           >  4:296523/1‑117 (MQ=255)                                                                                                                                         gcgGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTGGTCATCGCCTTGCTGGTg          <  4:145353/149‑1 (MQ=255)                                                                                                                                            gCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCGTGCTGCTGGTCATCGCCTTGCTGGTGCGa       >  5:307240/1‑149 (MQ=255)                                                                                                                                            gCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTGGTCATCGCCTTGCTGGTGCGa       <  1:6616/149‑1 (MQ=255)                                                                                                                                             ccTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTGGTCAt                       <  6:72532/132‑1 (MQ=255)                                                                                                                                             ccTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTGGTCAt                       >  5:72532/1‑132 (MQ=255)                                                                                                                                                 aGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTGGTCATCGCCTTGCTGGTGCGACACAt  >  2:140901/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GCGCGGTGCGCATGCACCTGCGGGCGGCAGGCGGGGTGGCGCGCCACTACCGCGGCCTGCTGATCGATGCATTGCAACAGGTACCCGCGCGCTACCGCGCCAGTGCTTTCAAACACCAGGCCTCGGCA‑CGCCTGCGCGGCCTGAGCGTGTTTGCCCGGCGGGCGTTCTATAGCGTGCTGACGGTATTCGCCCTCAGCCTCGCCCTGCTGTGCGTGACCGAACCGTTCGGCTACCTGGCGCAGCTGATGTTCATCTGCCTGCTGCTGGTCATCGCCTTGCTGGTGCGACACAT  >  NC_002947/3013755‑3014046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.