| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3020517 = | 52 (0.960) | 4 (0.080) | 4/248 | NT | 7.1% | coding (1055/3519 nt) | PP_2638 | cellulose synthase operon protein C |
| ? | NC_002947 | 3020547 = | 55 (1.070) | coding (1085/3519 nt) | PP_2638 | cellulose synthase operon protein C | |||||
GCCTGCATGGGGCCCTGGGTTATGCGTTGATGCGCCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGCCGAGGGCGATGT > NC_002947/3020373‑3020664 | gcaggtactgccgctcggcagccgccacatcgccctcggccagcgagacatctgccaggcccagcaacgcgtattcatcctttggccgttgctggcgagcctgctggtaaagtgcgcgcgcaccgcgcacgtctttcacctccaGGGcc < 6:129120‑M1/5‑1 (MQ=255)gcaggtactgccgctcggcagccgccacatcgccctcggccagcgagacatctgccaggcccagcaacgcgtattcatcctttggccgttgctggcgagcctgctggtaaagtgcgcgcgcaccgcgcacgtctttcacctccaGGGcc < 8:232935‑M1/5‑1 (MQ=255) gggCCCTGGGTTATGCGTTGATGCGCCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTgaa < 5:174802/148‑1 (MQ=255) tGGGTTATGCGTTGATGCGCCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGcc > 3:272971/1‑149 (MQ=255) aTGCGTTGATGCGCCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCgg > 3:267726/1‑149 (MQ=255) aTGCGCCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTg > 4:309142/1‑147 (MQ=255) aTGCGCCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTg > 4:304111/1‑147 (MQ=255) gcCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGt > 3:97282/1‑148 (MQ=255) cAGGGNCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGa > 7:242895/1‑148 (MQ=255) aGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGa > 5:315662/1‑147 (MQ=255) gggCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAg < 5:154523/149‑1 (MQ=255) gccgccATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGAc < 3:309142/149‑1 (MQ=255) gccgccATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGAc < 3:304111/149‑1 (MQ=255) gccgccATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGAc > 2:89359/1‑149 (MQ=255) gcgagacatctgccaggcccagcaacgcgtattcatcctttggccgttgctggcgagcctgctggtaaagtgcgcgcgcaccgcgcacgtctttcacctccaGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAgg < 5:156817‑M1/36‑1 (MQ=255) gcgagacatctgccaggcccagcaacgcgtattcatcctttggccgttgctggcgagcctgctggtaaagtgcgcgcgcaccgcgcacgtctttcacctccaGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAgg > 6:156817‑M1/103‑138 (MQ=255) ccATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACgtgc > 1:83766/1‑149 (MQ=255) tGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACgtgcgcg < 6:342740/149‑1 (MQ=255) tGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACCGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACgtgcgcg > 5:145185/1‑149 (MQ=255) aaGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACgtgcgcgg < 6:315662/148‑1 (MQ=255) aGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCCGGCCCTGGAGGTGAAAGACgtgcgcggt < 1:194414/148‑1 (MQ=255) gACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACgtgcgcggtgc < 5:342559/149‑1 (MQ=255) ccATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTgcgcgcg > 2:187743/1‑149 (MQ=255) ccATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTgcgcgcg > 7:33990/1‑149 (MQ=255) gTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTAcc < 1:89359/149‑1 (MQ=255) cgcgcgGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACcagc < 8:242895/148‑1 (MQ=255) gcgcgGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACcagcag > 1:316284/1‑149 (MQ=255) gcgcgGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATT‑GGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAgg < 7:242845/149‑1 (MQ=255) cAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAAc > 5:71557/1‑149 (MQ=255) aaGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACg > 2:324768/1‑149 (MQ=255) ggAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGc > 7:249494/1‑149 (MQ=255) acacCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGAt < 8:249494/149‑1 (MQ=255) cacCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATg < 4:267726/149‑1 (MQ=255) gagcctgctggtaaagtgcgcgcgcaccgcgcacgtctttcacctccaGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTg > 2:146668‑M1/49‑80 (MQ=255) gagcctgctggtaaagtgcgcgcgcaccgcgcacgtctttcacctccaGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTg < 1:146668‑M1/32‑1 (MQ=255) tACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATa > 5:125567/1‑149 (MQ=255) aCTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATAc > 8:85328/1‑149 (MQ=255) ccAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTgg < 1:187743/149‑1 (MQ=255) ccAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTgg < 4:272971/149‑1 (MQ=255) ccAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTg > 5:159533/1‑148 (MQ=255) ccAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTg < 6:159533/148‑1 (MQ=255) aaTGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGc > 6:161312/1‑149 (MQ=255) ggAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCGAACGGATGAATACGCGTTGCTGGGCGTg > 4:236172/1‑149 (MQ=255) gAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTg < 2:83766/148‑1 (MQ=255) aaGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAACACGCGTTGCTGGGCCTgg > 4:14763/1‑148 (MQ=255) aGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTgg > 3:13773/1‑147 (MQ=255) ggACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTgg > 8:82852/1‑146 (MQ=255) aCCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGAt < 6:71557/149‑1 (MQ=255) cTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGt < 7:82852/149‑1 (MQ=255) tcCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGc > 3:16757/1‑149 (MQ=255) tccgccagTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGcc < 3:118462/146‑1 (MQ=255) cagccagTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACg < 7:47993/99‑1 (MQ=255) cagccagTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACg > 8:47993/1‑99 (MQ=255) cagccagTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGcc > 6:240025/1‑148 (MQ=255) ccagTATTTGGCCCGGCTGAAGAAAGCCGCGCGGGCCCGGGGGGTGAAAGACGTGCGCGGTGCGCGCGCCCTTTAACAGCACGCGCGCCAGCAACCGCCAAAGGATGAATACGCGTTGGTGGGCCGGGCAGATGTCTCGCTGGcc > 4:118462/1‑145 (MQ=255) cagTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGCCGAggg > 5:129120/1‑149 (MQ=255) cagTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGCCGAggg < 4:13773/149‑1 (MQ=255) cagTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGCCGAggg > 7:232935/1‑149 (MQ=255) ttGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGCCGAGGGCGAt < 5:240025/148‑1 (MQ=255) GGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGCCGAGGGCGAtgt > 1:67659‑M1/1‑148 (MQ=255) | GCCTGCATGGGGCCCTGGGTTATGCGTTGATGCGCCAGGGCCGCCATGAAGACGCCCATGCGGCGTTCCGCGCGGCGAGCGCCAAGGAGCAGGACACCTACTGGATCAGCCAATGGAAGGACCTGGAGTCGTCCAGCCAGTATTGGGCCCTGCTGAAGAAAGCCGAGCGGGCCCTGGAGGTGAAAGACGTGCGCGGTGCGCGCGCACTTTACCAGCAGGCTCGCCAGCAACGGCCAAAGGATGAATACGCGTTGCTGGGCCTGGCAGATGTCTCGCTGGCCGAGGGCGATGT > NC_002947/3020373‑3020664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |