New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3394942 =	44 (0.810)	3 (0.060)	3/246	NT	6.3%	coding (443/948 nt)	PP_2998	2‑dehydropantoate 2‑reductase
	?	NC_002947	3394991 =	47 (0.920)					coding (492/948 nt)	PP_2998	2‑dehydropantoate 2‑reductase

CTGTCGCTGCAGAACGGGCTCGGCCACGAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGTTGAGC  >  NC_002947/3394794‑3395090                                                                                                                                                     |                                                                                                                                                      cTGTCGCTGCAGAACGGGCTCGGCCACGAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCAt                                                                                                                                                       <  4:191252/149‑1 (MQ=255)  tGTCGCTGCAGAACGGGCTCGGCCACGAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATc                                                                                                                                                      >  3:84674/1‑149 (MQ=255)   gctacggccagctgtacagcgagccgtagctgagcctggtgatgccgctcaacgcaccggtggcgacgttgaccagcagcttgtcccacatggtgccgaggatgttgtcgctgaccgtggtggccagcccggcattgatgaacgctTCg                                                                                                                                                     <  3:302897‑M1/3‑1 (MQ=255)    tCGCTGCAGAACGGGCTCGGCCACGAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCgg                                                                                                                                                    >  8:184727/1‑149 (MQ=255)      gCTGCAGAACGGGCTCGGCCACGAGGACATGCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCg                                                                                                                                                  <  1:317463/149‑1 (MQ=255)       cggctcgctgtacagctggccgtagctgagcctggtgatgccgctcaacgcaccggtggcgacgttgaccagcagcttgtcccacatggtgccgaggatgttgtcgctgaccgtggtggccagcccggcattgttgaacgctTCGGCGa                                                                                                                                                 >  6:153321‑M1/143‑149 (MQ=255)          cAGAACGGGCTCGGCCACGAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCt                                                                                                                                              >  8:105427/1‑149 (MQ=255)                      ggCCACGAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAg                                                                                                                                    <  5:334475/147‑1 (MQ=255)                            gAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGAGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGcc                                                                                                                            >  4:95725/1‑149 (MQ=255)                                          cGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGACGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGACCCGCGTGCAGGcc                                                                                                               >  4:302897/1‑148 (MQ=255)                                              gtggtgGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGc                                                                                                          <  7:184727/149‑1 (MQ=255)                                                 gctcaacgcaccggtggcgacgttgaccagcagcttgtcccacatggtgccgaggatgttgtcgctgaccgtggtggccagcccggcattgttgaacgctTCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCg                                                                                                        <  3:257440‑M1/48‑1 (MQ=255)                                                  ctcaacgcaccggtggcgacgttgaccagcagcttgtcccacatggtgccgaggatgttgtcgctgaccgtggtggccagcccggcattgttgaacgctTCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGaa                                                                                                      >  1:209001‑M1/100‑149 (MQ=255)                                                     gTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCa                                                                                                                                     <  1:174935/115‑1 (MQ=255)                                                     gTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCa                                                                                                                                     >  2:174935/1‑115 (MQ=255)                                                          gAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTAATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAACCGTTca                                                                                               >  3:45238/1‑148 (MQ=255)                                                               tgTGCTGGAGGGCAATACCTATGTCGGCGGCGTTCTCCTCGTGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGCCTTTCATCGGCGAGCTCGACGTCCAGCTGAAGCCCCGCGTGCAGGCCATCGCAGAAGCGTTCAACAATg                                                                                         <  4:45238/148‑1 (MQ=255)                                                                gTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGc                                                                                        >  6:86894/1‑149 (MQ=255)                                                                      gttgaccagcagcttgtcccacatggtgccgaggatgttgtcgctgaccgtggtggccagcccggcattgttgaacgctTCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCt                                                                                  >  4:257440‑M1/80‑149 (MQ=255)                                                                      gctggcAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCt                                                                                  >  5:55329/1‑149 (MQ=255)                                                                        tggcAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTgg                                                                                >  5:189923/1‑149 (MQ=255)                                                                        tggcAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGGTCACCAATGCCGGGCTgg                                                                                >  5:185075/1‑149 (MQ=255)                                                                         ggcAAGACCTATGTCGGCGGCTTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGGCATCGCCGAAGCGTTCAACAATGCCGGGCTGGc                                                                               <  3:95725/149‑1 (MQ=255)                                                                          gcAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGcc                                                                              >  7:140984/1‑149 (MQ=255)                                                                                ccTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACg                                                                        <  7:105427/149‑1 (MQ=255)                                                                                 cTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGACTGGCCACCACgg                                                                       >  7:160081/1‑149 (MQ=255)                                                                                    tGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGACTGGCCACCACGGTc                                                                     <  8:160081/148‑1 (MQ=255)                                                                                           ggcgTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGacaa                                                             <  4:84674/149‑1 (MQ=255)                                                                                                 ctcctcGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCt                                                       <  6:185075/149‑1 (MQ=255)                                                                                                    ctcGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCgg                                                    >  3:55969/1‑149 (MQ=255)                                                                                                    ctcGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCgg                                                    <  2:269745/149‑1 (MQ=255)                                                                                                    ctcGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCgg                                                    >  5:351062/1‑149 (MQ=255)                                                                                                    ctcGCGCCGGGCTCGATCAGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCGGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCt                                                       <  6:189923/146‑1 (MQ=255)                                                                                                     tcGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGaa                                                                                                      <  7:285605/98‑1 (MQ=255)                                                                                                     tcGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGaa                                                                                                      >  8:285605/1‑98 (MQ=255)                                                                                                     tcGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCgg                                                    >  2:194664/1‑148 (MQ=255)                                                                                                         gcCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATc                                                         <  8:11268/139‑1 (MQ=255)                                                                                                         gcCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATc                                                         >  7:11268/1‑139 (MQ=255)                                                                                                           cGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCAtg                                             <  6:351062/149‑1 (MQ=255)                                                                                                               cTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTgg                                          >  1:208359/1‑148 (MQ=255)                                                                                                                  gATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑Ac                                      >  4:259745/1‑148 (MQ=255)                                                                                                                     ccGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAgc                                  <  5:249707/149‑1 (MQ=255)                                                                                                                                  gCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGt                     >  2:211467/1‑149 (MQ=255)                                                                                                                                    cagCAAACAGACATTCATCGGCTAGCTAGACGGCCAGCTGACGCCACGCGATCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGACACCACGGTCACCCACAACATCCACGGCACCAATTGGG‑ACAAGCTGCCTCTCAACgcaa                   >  3:199592/3‑146 (MQ=255)                                                                                                                                          aCAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCg             <  4:55969/149‑1 (MQ=255)                                                                                                                                            aGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑TCAAGCTGCTGGTCAACGTCGCCACCGGt           <  1:194664/149‑1 (MQ=255)                                                                                                                                            aGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAg                                   >  5:324906/1‑125 (MQ=255)                                                                                                                                            aGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAg                                   <  6:324906/125‑1 (MQ=255)                                                                                                                                            aGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGt           >  3:108299/1‑149 (MQ=255)                                                                                                                                              aCTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGCTGc         >  3:173086/1‑149 (MQ=255)                                                                                                                                              aCTGTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGGTCAACAATGCCGGGCTGGCCACCAGGGTCAGCGACACCATCCTCGGCACCATGTGGG‑ACAGGCTGCTGGTCACGGTCGCCACCGGTGc         >  4:65892/1‑149 (MQ=255)                                                                                                                                               cTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGGCACAAGCTGCTGGTCAACGTCGCCACCGGTGc         <  1:211467/149‑1 (MQ=255)                                                                                                                                                tttCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGt       >  1:313286/1‑149 (MQ=255)                                                                                                                                                tttCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGt       >  1:132770/1‑149 (MQ=255)                                                                                                                                                  tCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGtt      <  2:132770/148‑1 (MQ=255)                                                                                                                                                  tCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGtt      >  4:261312/1‑148 (MQ=255)                                                                                                                                                    aTCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGTTGa    <  2:313286/148‑1 (MQ=255)                                                                                                                                                     TCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGTTGAGc  >  5:86894‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CTGTCGCTGCAGAACGGGCTCGGCCACGAGGACATCCTGGCCGAAGTGGTGGGTCGCGAGCGGGTGCTGGCTGGCAAGACCTATGTCGGCGGCGTGCTCCTCGCGCCGGGCTCGATCCGCGCCGGTGTGGCCGGCAAACAGACTTTCATCGGCGAGCTCGACGGCCAGCTGACGCCCCGCGTGCAGGCCATCGCCGAAGCGTTCAACAATGCCGGGCTGGCCACCACGGTCAGCGACAACATCCTCGGCACCATGTGGG‑ACAAGCTGCTGGTCAACGTCGCCACCGGTGCGTTGAGC  >  NC_002947/3394794‑3395090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.