New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3582944 | 43 (0.800) | 4 (0.080) | 4/248 | NT | 9.4% | coding (1015/1359 nt) | benA | benzoate 1,2‑dioxygenase subunit alpha |
? | NC_002947 | = 3582963 | 36 (0.700) | coding (1034/1359 nt) | benA | benzoate 1,2‑dioxygenase subunit alpha |
GCCAGGCACGTGCCGACTGGATGATCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGAA > NC_002947/3582798‑3583089 | gCCAGGCACGTGCCGACTGGATGATCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATcgcg > 5:309078/1‑149 (MQ=255) ccAGTCAGGTGCCGACTGGATGATCGTAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGGTGCCCGGCAGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCgcgc < 3:61269/149‑1 (MQ=255) ccAGGCACGTGCCGACTGGATGATCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCgcgc < 3:298603/149‑1 (MQ=255) cACGTGCCGACTGGATGATCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGTGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGaaa < 7:195320/149‑1 (MQ=255) ccGACTGGATGATCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAgg > 5:8337/1‑145 (MQ=255) ccGACTGGATGATCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAgg < 6:8337/145‑1 (MQ=255) tCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcg < 5:43767‑M2/144‑3 (MQ=255) tCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcg > 6:43767‑M2/1‑142 (MQ=255) aaaaCTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGt < 5:104605/149‑1 (MQ=255) tccTCGCGCCACCTTTGCCTGGACCCCAACGTGGACCTGATGGACCAGTTCCGCTCGCAGATCCGCGTTGCCCGTCCGATTGCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGt < 8:252364/145‑1 (MQ=255) aCTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGc > 4:151087/1‑148 (MQ=255) cTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGTCGAGAGGGACGATGCTCGt > 7:252364/1‑145 (MQ=255) gcgcAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGc < 6:309078/149‑1 (MQ=255) tGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCgaga > 8:161740/1‑114 (MQ=255) tGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCgaga < 7:161740/114‑1 (MQ=255) tGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcga < 5:156395‑M2/121‑4 (MQ=255) tGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcga > 6:156395‑M2/1‑118 (MQ=255) cccAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACTAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGa > 8:311866/1‑149 (MQ=255) cccAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGgcgctctcgcctttcggcgcgatgca > 5:158243‑M1/1‑94 (MQ=255) cccAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGgcgctctcgcctttcggcgcgatgca < 6:158243‑M1/120‑27 (MQ=255) tACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCaa < 1:328430/149‑1 (MQ=255) tGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGt > 6:160229/1‑148 (MQ=255) gTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATgg > 4:194204/1‑149 (MQ=255) cTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGgcgctctcgcctttcggcgcgatgcagtagatg > 4:232398‑M1/1‑65 (MQ=255) cTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGgcgctctcgcctttcggcgcgatgcagtagatg < 3:232398‑M1/98‑34 (MQ=255) tCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGCCCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACGTCTTCAACGTCAGCGGCATGGCcccccc > 6:284728/1‑149 (MQ=255) tCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAgcgc < 4:323728/83‑1 (MQ=255) tCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAgcgc > 3:323728/1‑83 (MQ=255) gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGcc < 4:166832/94‑1 (MQ=255) gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGcc > 3:166832/1‑94 (MQ=255) gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCgg > 5:200285/1‑149 (MQ=255) gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCg > 5:182837/1‑148 (MQ=255) cAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGga > 1:345094/1‑149 (MQ=255) agctCCGCGTTGCCCGGCCGATTTCGGTGAACAAGTCCGAA‑ATCACCATGTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGgac < 8:260753/146‑1 (MQ=255) aGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGgac < 3:151087/149‑1 (MQ=255) cccGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGgaagaa > 3:210874/1‑149 (MQ=255) cGGCTGATTTCGGTGAACAAGACCGAAGATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAAt > 1:15268/1‑149 (MQ=255) gCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTcc < 2:305832/149‑1 (MQ=255) ggTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGc < 2:345094/148‑1 (MQ=255) ggTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCAGCTCGTGc > 3:296022/1‑148 (MQ=255) tGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGc > 7:28608/1‑146 (MQ=255) gAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGa > 2:275443/1‑149 (MQ=255) gACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCa < 6:40543/89‑1 (MQ=255) gACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGc > 8:81814/1‑148 (MQ=255) gACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGc > 6:140427/1‑148 (MQ=255) aCCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTa > 5:237228/1‑149 (MQ=255) cGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTg < 6:236697/118‑1 (MQ=255) cGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTg > 5:236697/1‑118 (MQ=255) cGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACACCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATg > 8:209532/1‑149 (MQ=255) cACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATggcggcg > 3:188919/1‑149 (MQ=255) aCCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATggcggcgg < 4:296022/149‑1 (MQ=255) ccATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATggcggcggc < 3:194204/149‑1 (MQ=255) cATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgag > 4:232398‑M2/1‑33 (MQ=255) cATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgag < 3:232398‑M2/98‑66 (MQ=255) cATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCa < 4:188919/149‑1 (MQ=255) aCTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCActggc > 1:331073/1‑149 (MQ=255) tGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggg > 5:158243‑M2/1‑26 (MQ=255) tGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggg < 6:158243‑M2/120‑95 (MQ=255) aTCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGaa < 5:140427/149‑1 (MQ=255) tCGgcgctctcgcctttcggcgcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggggtaca < 5:156395‑M1/121‑119 (MQ=255) tCGgcgctctcgcctttcggcgcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggggtaca > 6:156395‑M1/1‑3 (MQ=255) cGgcgctctcgcctttcggcgcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggggtacaggcacaggttgcgcgagttttcga > 6:43767‑M1/1‑2 (MQ=255) cGgcgctctcgcctttcggcgcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggggtacaggcacaggttgcgcgagttttcga < 5:43767‑M1/144‑143 (MQ=255) | GCCAGGCACGTGCCGACTGGATGATCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGAA > NC_002947/3582798‑3583089 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |