New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3582944	43 (0.800)	4 (0.080)	4/248	NT	9.4%	coding (1015/1359 nt)	benA	benzoate 1,2‑dioxygenase subunit alpha
	?	NC_002947	= 3582963	36 (0.700)					coding (1034/1359 nt)	benA	benzoate 1,2‑dioxygenase subunit alpha

TCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGAACGACATGTCCCGTGGCGCGAAA  >  NC_002947/3582822‑3583111                                                                                                                                               |                                                                                                                                                     tCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcg                                                                                                                                                    <  5:43767‑M2/144‑3 (MQ=255) tCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcg                                                                                                                                                    >  6:43767‑M2/1‑142 (MQ=255)    aaaaCTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGt                                                                                                                                            <  5:104605/149‑1 (MQ=255)      tccTCGCGCCACCTTTGCCTGGACCCCAACGTGGACCTGATGGACCAGTTCCGCTCGCAGATCCGCGTTGCCCGTCCGATTGCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGt                                                                                                                                            <  8:252364/145‑1 (MQ=255)       aCTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGc                                                                                                                                          >  4:151087/1‑148 (MQ=255)        cTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGTCGAGAGGGACGATGCTCGt                                                                                                                                            >  7:252364/1‑145 (MQ=255)           gcgcAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGc                                                                                                                                     <  6:309078/149‑1 (MQ=255)                         tGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcga                                                                                                                                                   >  6:156395‑M2/1‑118 (MQ=255)                         tGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcga                                                                                                                                                   <  5:156395‑M2/121‑4 (MQ=255)                              cccAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACTAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGa                                                                                                                  >  8:311866/1‑149 (MQ=255)                                       tACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCaa                                                                                                         <  1:328430/149‑1 (MQ=255)                                           tGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGt                                                                                                      >  6:160229/1‑148 (MQ=255)                                                     gTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATgg                                                                                           >  4:194204/1‑149 (MQ=255)                                                            tCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGCCCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACGTCTTCAACGTCAGCGGCATGGCcccccc                                                                                    >  6:284728/1‑149 (MQ=255)                                                            tCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAgcgc                                                                                                                                                      >  3:323728/1‑83 (MQ=255)                                                            tCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAgcgc                                                                                                                                                      <  4:323728/83‑1 (MQ=255)                                                              gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGcc                                                                                                                                         >  3:166832/1‑94 (MQ=255)                                                              gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGcc                                                                                                                                         <  4:166832/94‑1 (MQ=255)                                                              gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCgg                                                                                  >  5:200285/1‑149 (MQ=255)                                                              gCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCg                                                                                   >  5:182837/1‑148 (MQ=255)                                                               cAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGga                                                                                 >  1:345094/1‑149 (MQ=255)                                                                agctCCGCGTTGCCCGGCCGATTTCGGTGAACAAGTCCGAA‑ATCACCATGTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGgac                                                                                <  8:260753/146‑1 (MQ=255)                                                                aGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGgac                                                                                <  3:151087/149‑1 (MQ=255)                                                                            cccGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGgaagaa                                                                    >  3:210874/1‑149 (MQ=255)                                                                              cGGCTGATTTCGGTGAACAAGACCGAAGATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAAt                                                                   >  1:15268/1‑149 (MQ=255)                                                                                gCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTcc                                                                <  2:305832/149‑1 (MQ=255)                                                                                         ggTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGc                                                        <  2:345094/148‑1 (MQ=255)                                                                                         ggTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCAGCTCGTGc                                                        >  3:296022/1‑148 (MQ=255)                                                                                           tGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGc                                                        >  7:28608/1‑146 (MQ=255)                                                                                            gAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGa                                                    >  2:275443/1‑149 (MQ=255)                                                                                                  gACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCa                                                                                                          <  6:40543/89‑1 (MQ=255)                                                                                                  gACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGc                                               >  8:81814/1‑148 (MQ=255)                                                                                                  gACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGc                                               >  6:140427/1‑148 (MQ=255)                                                                                                   aCCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTa                                             >  5:237228/1‑149 (MQ=255)                                                                                                     cGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTg                                                                          >  5:236697/1‑118 (MQ=255)                                                                                                     cGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTg                                                                          <  6:236697/118‑1 (MQ=255)                                                                                                     cGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACACCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATg                                           >  8:209532/1‑149 (MQ=255)                                                                                                            cACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATggcggcg                                     >  3:188919/1‑149 (MQ=255)                                                                                                             aCCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATggcggcgg                                    <  4:296022/149‑1 (MQ=255)                                                                                                              ccATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATggcggcggc                                   <  3:194204/149‑1 (MQ=255)                                                                                                               cATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgag                                                                                     >  4:232398‑M2/1‑33 (MQ=255)                                                                                                               cATCTACTGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgag                                                                                     <  3:232398‑M2/98‑66 (MQ=255)                                                                                                               cATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCa                                  <  4:188919/149‑1 (MQ=255)                                                                                                                    aCTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCActggc                             >  1:331073/1‑149 (MQ=255)                                                                                                                      tGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggg                                                        >  5:158243‑M2/1‑26 (MQ=255)                                                                                                                      tGCATCGCGCCGAAAGGCGAGAGCGCcgatgcagtagatggtgatttcggtcttgttcaccgaaatcggccgggcaacgcggatctgcgagctgaactggtccatcaggtacacgttggg                                                        <  6:158243‑M2/120‑95 (MQ=255)                                                                                                                         aTCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGaa                        <  5:140427/149‑1 (MQ=255)                                                                                                                                cGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACACCGGAAGACCTCGAAGAATTCCGCTCGTGCCAGACCGGCTATCGCGGCGGCACTGGCTGGAACGACATg                 >  8:32198/1‑149 (MQ=255)                                                                                                                                  aaaGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGAACGACATGTc               <  1:275443/149‑1 (MQ=255)                                                                                                                                               ccGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGAACGACATGTCCCGTGGCGCGaaa  <  7:311866/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     TCGAAAACTCGCGCAACCTGTGCCTGTACCCCAACGTGTACCTGATGGACCAGTTCAGCTCGCAGATCCGCGTTGCCCGGCCGATTTCGGTGAACAAGACCGAA‑ATCACCATCTACTGCATCGCGCCGAAAGGCGAGAGCGCCGATGCTCGTGCCAAGCGTATTCGCCAGTACGAAGACTTCTTCAACGTCAGCGGCATGGCCACCCCGGACGACCTGGAAGAATTCCGCTCGTGCCAGACCGGCTATGGCGGCGGCACTGGCTGGAACGACATGTCCCGTGGCGCGAAA  >  NC_002947/3582822‑3583111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.