New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3721625	44 (0.810)	3 (0.060)	3/246	NT	6.6%	coding (579/798 nt)	fnrC	Crp/Fnr family transcriptional regulator
	?	NC_002947	= 3721660	43 (0.840)					coding (544/798 nt)	fnrC	Crp/Fnr family transcriptional regulator

TACCAACCTGCCATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGC  >  NC_002947/3721478‑3721772                                                                                                                                                    |                                                                                                                                                    tACCAACCTGCCATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGa                                                                                                                                                    >  3:210481/1‑149 (MQ=255)    cAACCTGCCATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACg                                                                                                                                                  >  3:337053/1‑148 (MQ=255)    cAACCTGCCATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACg                                                                                                                                                  >  2:332369/1‑148 (MQ=255)     aaCCTGCCATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGaa                                                                                                                                                <  4:210481/149‑1 (MQ=255)           ccATGCAGGTCGACGATACCCAGCGCGCGCAGCCGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCAGCAACATGAAGCCATGGGCACAGTAACCGCGGCTGACGAAGCGCCt                                                                                                                                          >  8:112304/1‑149 (MQ=255)           ccATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCt                                                                                                                                          <  8:169683/149‑1 (MQ=255)            cATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTg                                                                                                                                         <  4:337053/149‑1 (MQ=255)                  ggTCTACGATACCCAGCGGGAGCAGACGGGCTACGGATCGGCACACTGTTTCGAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGc                                                                                                                                   <  4:10585/149‑1 (MQ=255)                  ggTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGc                                                                                                                                   <  5:112162/149‑1 (MQ=255)                  ggTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGc                                                                                                                                   <  4:164011/149‑1 (MQ=255)                      gacgaTACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGcccc                                                                                                                                <  7:61345/148‑1 (MQ=255)                       acgaTACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCccac                                                                                                                              >  7:246871/1‑149 (MQ=255)                                        cAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagcc                                                                                                             >  8:18334‑M2/1‑144 (MQ=255)                                          gACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGgccagcttcctggtggggctctccaggcgcttcgtcagccgc                                                                                                           <  2:133040‑M1/149‑43 (MQ=255)                                               gCGACGGATCGGCACACGGTTTACAGGCGTAAACACAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTc                                                                                                      >  7:50104/1‑149 (MQ=255)                                                 gACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTg                                                                                                    <  8:246871/149‑1 (MQ=255)                                                  aCGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGc                                                                                                   <  3:322416/149‑1 (MQ=255)                                                         ggCACACGGTTTCCAGGCGTAAACCCAGGTACTAATCCATGTCTTCACGACACATCCGCAACATTAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAgg                                                                                            <  8:50104/149‑1 (MQ=255)                                                          gCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGgccagcttcctggtggggctctccaggcgcttcgtcagccgcgg                                                                                                         >  1:290002‑M1/1‑91 (MQ=255)                                                          gCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGgccagcttcctggtggggctctccaggcgcttcgtcagccgcgg                                                                                                         <  2:290002‑M1/135‑45 (MQ=255)                                                          gCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGt                                                                                           >  6:138437/1‑149 (MQ=255)                                                          gCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGt                                                                                           <  5:64820/149‑1 (MQ=255)                                                               cGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGca                                                                                       >  3:296140/1‑148 (MQ=255)                                                                ggTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGAc                                                                                                                                                   <  4:288421/87‑1 (MQ=255)                                                                ggTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGAc                                                                                                                                                   >  3:288421/1‑87 (MQ=255)                                                                ggTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGcaca                                                                                     <  1:332369/149‑1 (MQ=255)                                                                       aGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGcc                                                                                                                                  <  6:322870/97‑1 (MQ=255)                                                                       aGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGcc                                                                                                                                  >  5:322870/1‑97 (MQ=255)                                                                       aGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAg                                                                              >  5:281448/1‑149 (MQ=255)                                                                       aGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAg                                                                              >  1:121517/1‑149 (MQ=255)                                                                               aCCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGcc                                                                      >  4:297136/1‑149 (MQ=255)                                                                                 ccAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCg                                                                    >  5:70116/1‑149 (MQ=255)                                                                                 ccAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCg                                                                    >  4:4768/1‑149 (MQ=255)                                                                                      tACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCt                                                                >  5:105486/1‑148 (MQ=255)                                                                                            gCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTcacgcac                                                         <  4:296140/149‑1 (MQ=255)                                                                                                           gaCATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCtcat                                          >  8:245830/1‑149 (MQ=255)                                                                                                                 cGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGc                                     <  6:281448/148‑1 (MQ=255)                                                                                                                       aTGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAg                                       >  1:58949/1‑140 (MQ=255)                                                                                                                       aTGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAg                                       <  2:58949/140‑1 (MQ=255)                                                                                                                       aTGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAg                              <  7:112304/149‑1 (MQ=255)                                                                                                                        tGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAgg                             <  6:70116/149‑1 (MQ=255)                                                                                                                               aTGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTcc                                                  >  5:165284/1‑121 (MQ=255)                                                                                                                               aTGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTcc                                                  <  6:165284/121‑1 (MQ=255)                                                                                                                               aTGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtgct                      >  4:320889/1‑149 (MQ=255)                                                                                                                                tGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtgctg                     <  6:105486/149‑1 (MQ=255)                                                                                                                                 gggCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtgctg                     >  6:236449/1‑148 (MQ=255)                                                                                                                                  ggCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGTTTtgctgc                    <  3:297136/148‑1 (MQ=255)                                                                                                                                   gCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAg                  >  4:95359/1‑149 (MQ=255)                                                                                                                                      gagTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTc               >  1:159603/1‑149 (MQ=255)                                                                                                                                        gTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGcac                                                                                      >  7:292350/1‑76 (MQ=255)                                                                                                                                        gTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGcac                                                                                      <  8:292350/76‑1 (MQ=255)                                                                                                                                            ccGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagccgcggttactctgcccatggcttcatgttgcggatgtctcgtgaagacatggcttcgtacctgggtttacgcctggaaaccgtgtgc                       >  1:290002‑M2/1‑44 (MQ=255)                                                                                                                                            ccGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagccgcggttactctgcccatggcttcatgttgcggatgtctcgtgaagacatggcttcgtacctgggtttacgcctggaaaccgtgtgc                       <  2:290002‑M2/135‑92 (MQ=255)                                                                                                                                            ccGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGaaa         <  5:138437/149‑1 (MQ=255)                                                                                                                                             cgcgGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtg                        <  6:180728/133‑1 (MQ=255)                                                                                                                                             cgcgGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtg                        >  5:180728/1‑133 (MQ=255)                                                                                                                                              gcgGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagccgcggttactctgcccatggcttcatgttgcggatgtctcgtgaagacatggcttcgtacctgggtttacgcctggaaaccgtgtgccgatccgtcgcccgtc       <  2:133040‑M2/149‑108 (MQ=255)                                                                                                                                                ggCTGgccagcttcctggtggggctctccaggcgcttcgtcagccgcggttactctgcccatggcttcatgttgcggatgtctcgtgaagacatggcttcgtacctgggtttacgcctggaaaccgtgtgccgatccgtcgcccgtctg     >  8:18334‑M1/1‑5 (MQ=255)                                                                                                                                                   tGACGAAGCGCCTGGAGGGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCAcgc  >  7:188552/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TACCAACCTGCCATGCAGGTCGACGATACCCAGCGCGCGCAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGC  >  NC_002947/3721478‑3721772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.