New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3721625	44 (0.810)	3 (0.060)	3/246	NT	6.6%	coding (579/798 nt)	fnrC	Crp/Fnr family transcriptional regulator
	?	NC_002947	= 3721660	43 (0.840)					coding (544/798 nt)	fnrC	Crp/Fnr family transcriptional regulator

CAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGCAAGCGGCGATAGGGAACAG  >  NC_002947/3721517‑3721803                                                                                                                                                |                                                                                                                                                cAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagcc                                                                                                                                            >  8:18334‑M2/1‑144 (MQ=255)        gCGACGGATCGGCACACGGTTTACAGGCGTAAACACAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTc                                                                                                                                     >  7:50104/1‑149 (MQ=255)          gACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTg                                                                                                                                   <  8:246871/149‑1 (MQ=255)           aCGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGc                                                                                                                                  <  3:322416/149‑1 (MQ=255)                  ggCACACGGTTTCCAGGCGTAAACCCAGGTACTAATCCATGTCTTCACGACACATCCGCAACATTAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAgg                                                                                                                           <  8:50104/149‑1 (MQ=255)                   gCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGt                                                                                                                          <  5:64820/149‑1 (MQ=255)                   gCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGt                                                                                                                          >  6:138437/1‑149 (MQ=255)                        cGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGca                                                                                                                      >  3:296140/1‑148 (MQ=255)                         ggTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGcaca                                                                                                                    <  1:332369/149‑1 (MQ=255)                                aGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAg                                                                                                             >  1:121517/1‑149 (MQ=255)                                aGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAg                                                                                                             >  5:281448/1‑149 (MQ=255)                                        aCCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGcc                                                                                                     >  4:297136/1‑149 (MQ=255)                                          ccAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCg                                                                                                   >  5:70116/1‑149 (MQ=255)                                          ccAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCg                                                                                                   >  4:4768/1‑149 (MQ=255)                                               tACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCt                                                                                               >  5:105486/1‑148 (MQ=255)                                                     gCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTcacgcac                                                                                        <  4:296140/149‑1 (MQ=255)                                                                    gaCATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCtcat                                                                         >  8:245830/1‑149 (MQ=255)                                                                          cGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGc                                                                    <  6:281448/148‑1 (MQ=255)                                                                                aTGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAg                                                                      <  2:58949/140‑1 (MQ=255)                                                                                aTGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAg                                                                      >  1:58949/1‑140 (MQ=255)                                                                                aTGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAg                                                             <  7:112304/149‑1 (MQ=255)                                                                                 tGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAgg                                                            <  6:70116/149‑1 (MQ=255)                                                                                        aTGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTcc                                                                                 <  6:165284/121‑1 (MQ=255)                                                                                        aTGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTcc                                                                                 >  5:165284/1‑121 (MQ=255)                                                                                        aTGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtgct                                                     >  4:320889/1‑149 (MQ=255)                                                                                         tGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtgctg                                                    <  6:105486/149‑1 (MQ=255)                                                                                          gggCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtgctg                                                    >  6:236449/1‑148 (MQ=255)                                                                                           ggCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGTTTtgctgc                                                   <  3:297136/148‑1 (MQ=255)                                                                                            gCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAg                                                 >  4:95359/1‑149 (MQ=255)                                                                                               gagTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTc                                              >  1:159603/1‑149 (MQ=255)                                                                                                 gTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGcac                                                                                                                     <  8:292350/76‑1 (MQ=255)                                                                                                 gTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGcac                                                                                                                     >  7:292350/1‑76 (MQ=255)                                                                                                     ccGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagccgcggttactctgcccatggcttcatgttgcggatgtctcgtgaagacatggcttcgtacctgggtttacgcctggaaaccgtgtgc                                                      <  2:290002‑M2/135‑92 (MQ=255)                                                                                                     ccGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagccgcggttactctgcccatggcttcatgttgcggatgtctcgtgaagacatggcttcgtacctgggtttacgcctggaaaccgtgtgc                                                      >  1:290002‑M2/1‑44 (MQ=255)                                                                                                     ccGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGaaa                                        <  5:138437/149‑1 (MQ=255)                                                                                                      cgcgGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtg                                                       <  6:180728/133‑1 (MQ=255)                                                                                                      cgcgGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTtg                                                       >  5:180728/1‑133 (MQ=255)                                                                                                       gcgGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCcagccgcggttactctgcccatggcttcatgttgcggatgtctcgtgaagacatggcttcgtacctgggtttacgcctggaaaccgtgtgccgatccgtcgcccgtc                                      <  2:133040‑M2/149‑108 (MQ=255)                                                                                                            tGACGAAGCGCCTGGAGGGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCAcgc                                 >  7:188552/1‑149 (MQ=255)                                                                                                              aCGAAGCGCCTGGAGGGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCAcgc                                 <  8:188552/147‑1 (MQ=255)                                                                                                                gAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCa                             <  3:320889/149‑1 (MQ=255)                                                                                                                       cTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTg                      <  7:245830/149‑1 (MQ=255)                                                                                                                          gagaGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCTTGCTCACGCACGATCTCCCGGCTCGTCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGc                     <  2:121517/147‑1 (MQ=255)                                                                                                                                 ccaccaGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGCAAGCGGCGa            <  3:4768/149‑1 (MQ=255)                                                                                                                                 ccaccaGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGCAAGCGGCGa            >  4:65673/1‑149 (MQ=255)                                                                                                                                   accaGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGCAAGCGGCGa            >  8:121345/1‑147 (MQ=255)                                                                                                                                    ccaGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGCAAGCGGCGATAg         <  3:95359/149‑1 (MQ=255)                                                                                                                                           gCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGCAAGCGGCGATAGGGAACAg  <  2:159603/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                CAGACGGGCGACGGATCGGCACACGGTTTCCAGGCGTAAACCCAGGTACGAAGCCATGTCTTCACGAGACATCCGCAACATGAAGCCATGGGCAGAGTAACCGCGGCTGACGAAGCGCCTGGAGAGCCCCACCAGGAAGCTGGCCAGCCGCTGTTCTGCAGTCAGGTTGCACAGCATCAGCACACGCCCGTGCTCACGCACGATCTCCCGGCTCATCAGGCGATTCAGGCTTTGCTGCAGGTCCGGAAACTCACGCGCCAGGGTTTGCAAGCGGCGATAGGGAACAG  >  NC_002947/3721517‑3721803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.